Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03652 and BL01544

See Amino acid alignment / Visit BSNT_03652 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:39
# Commandline: needle
#    -asequence dna-align/BSNT_03652___yqhS.1.5803.seq
#    -bsequence dna-align/BL01544___yqhS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03652___yqhS-BL01544___yqhS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03652___yqhS-BL01544___yqhS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03652___yqhS
# 2: BL01544___yqhS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 464
# Identity:     326/464 (70.3%)
# Similarity:   326/464 (70.3%)
# Gaps:          43/464 ( 9.3%)
# Score: 1039.0
# 
#
#=======================================

BSNT_03652___      1 GTGCCTCATTTTTTGATTTTGAACGGACCGAATGTTAACCGGCTTGGGAG     50
                     .||||.|||.||||.||||||||||||||||||.|.|||||||||||.|.
BL01544___yqh      1 TTGCCGCATATTTTAATTTTGAACGGACCGAATTTAAACCGGCTTGGAAA     50

BSNT_03652___     51 TCGTGAGCCTGAAGTATTCGGCCGCCAGACAC--TGACCGATATTGAAAC     98
                     .||.||.||.||.||||.|||  |.|||||||  |.|||||| |||.|||
BL01544___yqh     51 ACGCGAACCCGATGTATACGG--GACAGACACATTAACCGAT-TTGGAAC     97

BSNT_03652___     99 --AGATCTTTTTCAGTTTGCTGAAGCCTTACATATCCAG--CTCACTTTC    144
                       ||| ||||||||.|||||.||||.|.|.||.|  |||  .|.|||||.
BL01544___yqh     98 AAAGA-CTTTTTCAATTTGCCGAAGGCATTCAGA--CAGAATTGACTTTT    144

BSNT_03652___    145 TTCCAGTCTAATCACGAAGGTGATTTGATAGATGCGATACATGAGGCTGA    194
                     ||.|||||.||.||||||||.||..||||.|||||..|.||||||||.||
BL01544___yqh    145 TTTCAGTCAAACCACGAAGGGGACCTGATTGATGCTCTTCATGAGGCAGA    194

BSNT_03652___    195 GGAGCAATACAGCGGGATTGTTCTGAACCCCGGCGCCCTGAGTCATTATA    244
                     ||||||||||...||.||.||..||||.||.||.||..|....|||||.|
BL01544___yqh    195 GGAGCAATACGATGGAATCGTCTTGAATCCGGGGGCTTTCTCGCATTACA    244

BSNT_03652___    245 GCTATGCGATCAGGGATGCTGT---TTCAAGCATCAGTCTTCCTGTGGTA    291
                     |||||||..||.|.|||||.||   |.||   |||||..|.||.|||.|.
BL01544___yqh    245 GCTATGCCCTCCGCGATGCGGTGGCTGCA---ATCAGCATACCGGTGATT    291

BSNT_03652___    292 GAGGTGCATTTATCAAA--CTTATACGCCAGGGAAGAATTCAGGCAACAG    339
                     |||||.|||.|.|||||  ||.||  ||.||||||||.|||.||||.|..
BL01544___yqh    292 GAGGTTCATCTTTCAAATCCTCAT--GCAAGGGAAGAGTTCCGGCACCGC    339

BSNT_03652___    340 TCGGTTATCGCTCCTGTTGCGAAAGGGCAGATTGTCGGTCTTGGAGCTGA    389
                     |||||.||||||||.|||||.|.|||.|||||...|||.||.||...|||
BL01544___yqh    340 TCGGTCATCGCTCCGGTTGCAAGAGGCCAGATCACCGGACTCGGCTTTGA    389

BSNT_03652___    390 AGGCTACAAGCTTGCTGTTCGCTACTTATT-----AAGCCAGCAAGGGGG    434
                     |||.||.|||||.||..|   || ||||||     ||  || |||     
BL01544___yqh    390 AGGTTATAAGCTGGCCAT---CT-CTTATTTTATGAA--CA-CAA-----    427

BSNT_03652___    435 AGAATCAAGATGA-    447
                     |.|| ||| || | 
BL01544___yqh    428 ATAA-CAA-AT-AG    438


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