Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03648 and BL01540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_03648___spoIIIAA.1.5803.seq
# -bsequence dna-align/BL01540___spoIIIAA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03648___spoIIIAA-BL01540___spoIIIAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03648___spoIIIAA-BL01540___spoIIIAA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03648___spoIIIAA
# 2: BL01540___spoIIIAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1016
# Identity: 628/1016 (61.8%)
# Similarity: 628/1016 (61.8%)
# Gaps: 184/1016 (18.1%)
# Score: 1833.0
#
#
#=======================================
BSNT_03648___ 1 TTGAATGAAATCGCTGAGGTTCTCCCTGATTCCATGAAAAACGCCCT--- 47
|||.|..|.|||.|.|||.|||||||.|||.|.||.|||..|||.||
BL01540___spo 1 TTGCACCACATCACAGAGATTCTCCCCGATACGATCAAACGCGCGCTCAG 50
BSNT_03648___ 48 --TTCTGAAATACCGGAACAACAATGGCTGGAAATCGA------AGAAGT 89
.||| .|| |.||.|| |||||||| |||||
BL01540___spo 51 CGGTCT-------TGG--CGACCAT-----GAAATCGATCAGATAGAAG- 85
BSNT_03648___ 90 CAGAATTCGGAT-----CAA-----CCGCCCTGTTGAATTGATTCGA--A 127
.|||||||.| ||| |||| |.|||.||.| || |
BL01540___spo 86 --AAATTCGGGTTCGGACAAGTCGTCCGC----TGGAACTGGT--GAACA 127
BSNT_03648___ 128 GAGGACAACC-TGTTTATTTGTCC--TATGCGGGCACGGCCGAGGA---T 171
.||||.|.|| .| .|||.||| ||||.||..|||.|.||.|| .
BL01540___spo 128 AAGGAAAGCCGCG---CTTTCTCCCTTATGTGGCGACGCCTGAAGACTCG 174
BSNT_03648___ 172 GCCCATCT--------GATCCTGAGCCGGCTCAGCAACTATAGTATGTAT 213
||.|.||| ||| |..|.||.||.||.||||||
BL01540___spo 175 GCGCTTCTTTTAAACAGAT-----------TGGGAAATTACAGCATGTAT 213
BSNT_03648___ 214 ACACTTGAAGAAGAGCTGAAGAAAGGGTATGTCACGATCAGAGGCGGCCA 263
|||||.|||||.||..||||.|||||.||||||||||||||||||||.||
BL01540___spo 214 ACACTGGAAGAGGAATTGAAAAAAGGATATGTCACGATCAGAGGCGGACA 263
BSNT_03648___ 264 CAGAGTCGGACTGGCGGGCAGAGTCATTACG--GAAAACGGAGGTGTGAA 311
|.|.||.||.||.||.|||.|.|| |..|| ||||||||.|..||.||
BL01540___spo 264 CCGCGTGGGGCTTGCCGGCCGGGT--TGTCGTCGAAAACGGGGCCGTCAA 311
BSNT_03648___ 312 AGGCCTCCGTGACATCGCATCTTTTAATATACGAATTGCCCGGCAAAAGC 361
|||..||.|.||.||..||||.||||||||.||.||||||....||||..
BL01540___spo 312 AGGAATCAGAGAAATATCATCATTTAATATTCGCATTGCCAAAGAAAAAA 361
BSNT_03648___ 362 TGGGGATTGCGGAGCCG-CTG-CTTCCATACTTATATCAAAACAGCTGGC 409
|.||.|||.|..|.||| .|| |..|||| ||||.|||||||...||||
BL01540___spo 362 TCGGCATTTCCAAACCGTATGTCCCCCAT--TTATTTCAAAACTCGTGGC 409
BSNT_03648___ 410 TGAATACGCTGATTATCGGACCGCCCCAAACCGGCAAAACAACACTTCTC 459
||||.||||||||||||||.|||||.||||||||.|||||||||||.|||
BL01540___spo 410 TGAACACGCTGATTATCGGTCCGCCGCAAACCGGAAAAACAACACTGCTC 459
BSNT_03648___ 460 CGGGACCTTGCGAGGCT------CTCAAGCACCGGCAA----------AA 493
.|.|||||.||.||||| .||..|.|.|||||| ||
BL01540___spo 460 AGAGACCTCGCCAGGCTGATCAGTTCGGGAAGCGGCAACGCCCCTGCCAA 509
BSNT_03648___ 494 AAAACATGCTGCCCGTAAAGACAGGGATCGTCGATGAACGGTCAGAGATT 543
|||| || .|||||.||.||.|||.||||.||.||.
BL01540___spo 510 AAAA----------GT------GGGGATTGTTGACGAAAGGTCTGAAATC 543
BSNT_03648___ 544 GCCGGATGTCTTCGCGGTATTCCGCAGCATCAATTTGG-TCAGAGA---- 588
||.||.|||.|...|||.||.|||||..||| || ||.|.||
BL01540___spo 544 GCAGGCTGTGTAAACGGCATACCGCAATATC-----GGCTCGGCGACCGG 588
BSNT_03648___ 589 --ATTGACGTGTTAGACGCCTGTCCAAAAGCTGAAGGGCTGATGATGATG 636
| |||.|..|.|||||||||||||||||.||||||||||||||||||
BL01540___spo 589 GCA--GACATCCTTGACGCCTGTCCAAAAGCGGAAGGGCTGATGATGATG 636
BSNT_03648___ 637 ATTCGATCCATGAGCCCTGAGGTGATGATTGTCGATGAAATCGGGCGTAT 686
||..||||.|||||.||.|||||.|||||.|.||||||.||||||.|.||
BL01540___spo 637 ATCAGATCGATGAGTCCGGAGGTAATGATCGCCGATGAGATCGGGAGAAT 686
BSNT_03648___ 687 GGAAGATACAGATGCACTTCTGGAGGCGCTGCATGCCGGTGTTTCAGTAA 736
||||||..||||.||.||..||||.|||.|.||.||.||.||..|.||.|
BL01540___spo 687 GGAAGACGCAGAAGCGCTCTTGGAAGCGGTCCACGCGGGGGTGACTGTCA 736
BSNT_03648___ 737 TCGTATCGGCGCATGGCTGGAGTATAT-CCGACCTGATGAAGCGGCCTTC 785
||||.|||||.||.||||..| .|||| |.||.||....|.|||.||.||
BL01540___spo 737 TCGTTTCGGCTCACGGCTACA-CATATGCAGATCTCGCCAGGCGTCCATC 785
BSNT_03648___ 786 ATTGAA---GCGTTTGTGGGAAGAAAGAGC-------CTTTGACCGCTAT 825
|||||| ||.| .|||||| .||||| ||.|.
BL01540___spo 786 ATTGAAAATGCTT----------CAAGAGCACCGGGTTTTTGA--GCGAA 823
BSNT_03648___ 826 T--TGGAATTATCAAGAGCAAAAGGGCCGGGCACAGTGAGCCAAAT-TTA 872
| |||||.|.||.|||...||.||.||.||||...||||||..|| .||
BL01540___spo 824 TCGTGGAACTTTCCAGAAAGAACGGTCCCGGCAGCCTGAGCCGCATCCTA 873
BSNT_03648___ 873 TGACAAAG---ACGGAAATGTGCTGTCTAGGACGACGGGCGTGAAAA--- 916
||.| |||||.|...||| ||||...|.|||
BL01540___spo 874 ----AATGGGAACGGAGAGCCGCT-----------CGGGGCAGCAAAGAG 908
BSNT_03648___ 917 --------CATGCTGA 924
||||||||
BL01540___spo 909 GATGTTATCATGCTGA 924
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