Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03641 and BL01535
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_03641___spoIIIAF.1.5803.seq
# -bsequence dna-align/BL01535___spoIIIAF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03641___spoIIIAF-BL01535___spoIIIAF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03641___spoIIIAF-BL01535___spoIIIAF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03641___spoIIIAF
# 2: BL01535___spoIIIAF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 431/677 (63.7%)
# Similarity: 431/677 (63.7%)
# Gaps: 103/677 (15.2%)
# Score: 1341.5
#
#
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BSNT_03641___ 1 ATGAGTTTTTTAACGGAATGGCTTACCACCATCGTGTTGTTTATCCTATT 50
|||...|||.|.||.||.|||||.||.|..||..|..|.|||||.||..|
BL01535___spo 1 ATGGAATTTCTGACAGAGTGGCTCACGAATATTATTCTATTTATTCTGAT 50
BSNT_03641___ 51 TGCAATTGTGATTGATATGCTGCTGCCGAGCTCCAGCATGCAAAAGTACG 100
.||.||.||.||.||||||||.|||||||..||.|||||||||||.||||
BL01535___spo 51 GGCGATCGTCATCGATATGCTTCTGCCGAATTCGAGCATGCAAAAATACG 100
BSNT_03641___ 101 CAAAAATGGTAGTCAGCCTGCTATTGATTGTCGTCATGCTTACGCCGAT- 149
|.||||||||..||||||||||.|||||.||.||.||.||.|..|||||
BL01535___spo 101 CGAAAATGGTGATCAGCCTGCTCTTGATCGTTGTAATACTGAACCCGATC 150
BSNT_03641___ 150 TTTTAAACTT--TTCAAGACAGACCCCGAAGTCATCTTTGAATACCTCAC 197
||.| ||| ||||.||||||.||.||.||.||.|||||..|.||.||
BL01535___spo 151 TTCT---CTTTATTCAGGACAGATCCGGATGTGATTTTTGAGAAGCTTAC 197
BSNT_03641___ 198 AAAAAACGGGCAGTCAG---AGTCTGCCGACATAAAAAATCAAATCAATT 244
|||||||||.|| || ||||...|||.|||||||||||..|.||||
BL01535___spo 198 AAAAAACGGACA---AGTTCAGTCAAACGAAATAAAAAATCAGCTGAATT 244
BSNT_03641___ 245 CAAAAAAAATAGAAATACAAGCTTCCCAGCGCGCATATATTCTAGAAGAA 294
||.||||||.||||||||||||.||.||.|..||||||||..|||||.|.
BL01535___spo 245 CAGAAAAAAAAGAAATACAAGCCTCACAACAAGCATATATCTTAGAACAG 294
BSNT_03641___ 295 ATGGCTGTCCAACTAAAAAAGAAAGCGGAGGAGAGATTCAGTCA--TGAT 342
||||||||.|||.|..|||||||.||.||||..||.||.| || .||.
BL01535___spo 295 ATGGCTGTTCAATTGGAAAAGAACGCAGAGGGCAGGTTTA--CAAGCGAC 342
BSNT_03641___ 343 GAATATAAAGTAGGCCGCATCAAACTCAC--------GGCAGGAGAAAAG 384
.||||.||..|||.|||..||.|..||.| |.|||..|||||
BL01535___spo 343 AAATACAAGATAGACCGAGTCGAGGTCTCTTCTGACAGCCAGCTGAAAA- 391
BSNT_03641___ 385 GTAGATTCAGAAGAGGATATTAAAACAATCAGCGTGTATATGGCCCCGTC 434
||||..|.||..| ||.|.|||.||...|.|.|.|.||.
BL01535___spo 392 -------CAGAGAAAGACCT-----CAGTAAGCATGCGGAAGTCTCGGTA 429
BSNT_03641___ 435 TTCT--------------GAAAAAACGGTCCAAACGGTCGCGCCGGTCCA 470
|||| |||||||||||||||.|.|||||.||.|||.|
BL01535___spo 430 TTCTTGAAACCAGCATCGGAAAAAACGGTCCAAGCCGTCGCTCCTGTCGA 479
BSNT_03641___ 471 CATTGATA--------------CAGATCATGCATACGTA---ACAAAAGA 503
.||..||| |||..|||||| |.| |.||||||
BL01535___spo 480 GATCAATACGGACCGGAGCTACCAGTCCATGCA---GGAAAGAGAAAAGA 526
BSNT_03641___ 504 AGCAGCC----GAACAAAAAGAAGCCAAACAGATACAAACGCAGCTCGCG 549
|..||.| |||...|.|||| |||||.||.
BL01535___spo 527 AAGAGACGGGGGAAGTCAGAGAA------------------CAGCTAGCA 558
BSNT_03641___ 550 GACATTTGGGAAATCGGAAG---TGAGAAAATTACGGTTCATATGGAAGG 596
|.|||.|||||||| ||| .||.||.|||||.||||||||.||||
BL01535___spo 559 GGCATCTGGGAAAT---AAGCCCCGACAAGATTACAGTTCATATCGAAG- 604
BSNT_03641___ 597 CGGGGAGA--GTGTCGGCAATGAATAA 621
||||||| |...|||||||||||||
BL01535___spo 605 -GGGGAGAACGAAGCGGCAATGAATAA 630
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