Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03613 and BL01519

See Amino acid alignment / Visit BSNT_03613 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_03613___spoIVB.1.5803.seq
#    -bsequence dna-align/BL01519___spoIVB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03613___spoIVB-BL01519___spoIVB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03613___spoIVB-BL01519___spoIVB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03613___spoIVB
# 2: BL01519___spoIVB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1308
# Identity:    1003/1308 (76.7%)
# Similarity:  1003/1308 (76.7%)
# Gaps:          51/1308 ( 3.9%)
# Score: 3766.5
# 
#
#=======================================

BSNT_03613___      1 ----ATGCCCGATAACATCAGAAAAGCAGTAGGTTTAATTCTCCTTGTTT     46
                         ||| ..||.||.|||||||||||.||.|||.|||||||||||||||
BL01519___spo      1 GTGGATG-TTGAAAAAATCAGAAAAGCTGTGGGTATAATTCTCCTTGTTT     49

BSNT_03613___     47 CGTTATTAAGTGTAGGTTTATGCAAACCGCTAAAAGAATATTTATTG--A     94
                     |.|||.||||||||||.||.|.|||||||.|.||||||||  .||||  |
BL01519___spo     50 CTTTAATAAGTGTAGGATTTTACAAACCGGTGAAAGAATA--CATTGTAA     97

BSNT_03613___     95 TTCCAACGCAAA---TGAGAGTATTTGAAACCCAAACACAAGCGATTGAA    141
                     |.||||   |||   |||...|.|||||.||....||.|..|||.|||||
BL01519___spo     98 TACCAA---AAAATTTGAACATTTTTGAGACGGGTACCCGTGCGGTTGAA    144

BSNT_03613___    142 ACAAGTTTATCGGTAAACGCTCAG-ACACC---AGA---ATCCTCAGAAG    184
                     ||.||.|||||.|       |||| ||.||   |||   |||.|||||||
BL01519___spo    145 ACGAGCTTATCCG-------TCAGTACTCCGAAAGATGGATCATCAGAAG    187

BSNT_03613___    185 CGTTTACAGT-AAAGAAAGATC----CGCA--TGAAAT-CAAGGTGACGG    226
                     |.||.|||.| ||||||| |||    ||.|  .||||| .||||.||   
BL01519___spo    188 CATTCACATTGAAAGAAA-ATCAAAACGAAGTGGAAATAAAAGGCGA---    233

BSNT_03613___    227 GCAAAAAATCAGGTGAGTCAGAATTGGTATATGATCTTGCCGGATTTCCA    276
                       |||.|||  ||..||.|||||.|.||.|||||..|||||||||||||.
BL01519___spo    234 --AAAGAAT--GGAAAGGCAGAACTCGTCTATGACTTTGCCGGATTTCCG    279

BSNT_03613___    277 ATTAAAAAAACAAAAGTGCATGTTCTTCCTGATTTAAAGGTTATACCTGG    326
                     .||||||||||.|||||..||||.||.||||||||.||.||..|.||.||
BL01519___spo    280 GTTAAAAAAACGAAAGTAAATGTCCTGCCTGATTTGAAAGTGGTTCCCGG    329

BSNT_03613___    327 CGGACAATCAATCGGTGTAAAACTTCATTCCGTCGGTGTTCTTGTCGTCG    376
                     |||.||.||.||.||||||||||||||||||||.|||||..|.|||||.|
BL01519___spo    330 CGGGCAGTCCATTGGTGTAAAACTTCATTCCGTTGGTGTATTGGTCGTGG    379

BSNT_03613___    377 GATTTCATCAAATCAATACAAGTGAAGGCAAAAAATCTCCGGGAGAAACG    426
                     |.|||||||||||||||||...|||||||||||||||.||.||.|||.|.
BL01519___spo    380 GTTTTCATCAAATCAATACCTCTGAAGGCAAAAAATCGCCCGGTGAAGCA    429

BSNT_03613___    427 GCCGGAATTGAAGCGGGCGACATCATTATTGAGATGAATGGACA-GAAAA    475
                     ||||||||.|..|..||||||||.||.|..||.||.||.|| || |||||
BL01519___spo    430 GCCGGAATCGCGGTAGGCGACATTATCACCGAAATCAACGG-CACGAAAA    478

BSNT_03613___    476 TTGAAAAAATGAATGATGTAGCCCCATTTATTCAAAAGGCTGGGAAAACT    525
                     |.||.|||||||||||..|..||||.||||||||||||||.||.|||||.
BL01519___spo    479 TCGAGAAAATGAATGACATTACCCCTTTTATTCAAAAGGCCGGAAAAACA    528

BSNT_03613___    526 GGTGAATCTTTAGATTTACTGATCAAACGTGATAAACAGAAAATCAAAAC    575
                     ||.|||.|.|||.||.|...|||.|||.|.|||||||||.||||||||||
BL01519___spo    529 GGAGAAACCTTACATCTGTCGATAAAAAGAGATAAACAGGAAATCAAAAC    578

BSNT_03613___    576 GAAGCT-GATCCCAGAAAAGGATGAAGGAGAAGGCAAATACAGAATCGGG    624
                     |||||| |.|||.| ||||.||..|.|..||||.|||||||||||||||.
BL01519___spo    579 GAAGCTCGTTCCGA-AAAAAGACCAGGCTGAAGACAAATACAGAATCGGC    627

BSNT_03613___    625 TTATATATCAGAGATTCTGCTGCCGGCATCGGCACTATGACCTTTTATGA    674
                     |||||||||||.||.|||||.||.||.||||||||.|||||.||||..||
BL01519___spo    628 TTATATATCAGGGACTCTGCCGCAGGAATCGGCACAATGACTTTTTTCGA    677

BSNT_03613___    675 ACCGAAAACAAAAAAATACGGAGCACTTGGCCACGTGATTTCCGATATGG    724
                     .||||||.|.||||||||||||||.|||||||||||||||||.|||||||
BL01519___spo    678 GCCGAAATCGAAAAAATACGGAGCGCTTGGCCACGTGATTTCAGATATGG    727

BSNT_03613___    725 ACACAAAGAAACCAATTGTAGTGGAGAATGGAGAAATCGTTAAATCCACT    774
                     |.||.||.|||||.||.||.||.||.||.|||.|||||||.|||||.||.
BL01519___spo    728 ATACGAAAAAACCGATCGTTGTTGAAAAAGGACAAATCGTGAAATCGACC    777

BSNT_03613___    775 GTAACATCAATTGAAAAAGGGACAGGCGGTAATCCGGGAGAAAAACTGGC    824
                     ||.||.||.|||||||||||.||||||||.|||||.|||||.||||||||
BL01519___spo    778 GTCACCTCGATTGAAAAAGGAACAGGCGGAAATCCCGGAGAGAAACTGGC    827

BSNT_03613___    825 GCGATTTTCCTCAGAACGCAAAACGATCGGGGATATTAACAGAAACAGCC    874
                     .||.||..|.||||||||.|||..||||||.|||||.|||||||||||.|
BL01519___spo    828 TCGTTTCGCATCAGAACGAAAAGTGATCGGCGATATCAACAGAAACAGTC    877

BSNT_03613___    875 CGTTTGGGATTTTCGGCACACTGCATCAGCCGATTCAAAACAACATATCA    924
                     |.||.|||||.|||||.||.||.||..||.|.|||.|||||..|||..|.
BL01519___spo    878 CATTCGGGATCTTCGGAACGCTTCACGAGTCAATTAAAAACCGCATCGCT    927

BSNT_03613___    925 GATCAAG-CATTGCCGGTTGCGTTTTCTACCGAAGTCAAAAAAGGGCCGG    973
                     ||..||| |||| |||.||||.|||||....|||||.|||.||||.||.|
BL01519___spo    928 GACAAAGCCATT-CCGATTGCATTTTCAGATGAAGTAAAAGAAGGCCCTG    976

BSNT_03613___    974 CTGAAATTTTAACCGTTATTGATGATGACAAAGTAGAAAAATTCGATATT   1023
                     |..||||||||||.||||||||..|.||||||||.||.||||||||||||
BL01519___spo    977 CCCAAATTTTAACGGTTATTGAAAACGACAAAGTCGAGAAATTCGATATT   1026

BSNT_03613___   1024 GAAATCGTTAGCACAACGCCGCAAAAATTCCCTGCGACAAAAGGAATGGT   1073
                     .|..||||.||.||.||.||.||.||.||.||.||.|||||.||.|||||
BL01519___spo   1027 CAGGTCGTCAGTACGACACCTCAGAAGTTTCCGGCCACAAAGGGCATGGT   1076

BSNT_03613___   1074 GTTGAAAATTACCGATCCAAGGCTGTTGAAAGAAACAGGAGGCATCGTAC   1123
                     |.|||||||.|||||.||.||||||||||...||||||||||||||||.|
BL01519___spo   1077 GCTGAAAATCACCGACCCGAGGCTGTTGAGTAAAACAGGAGGCATCGTTC   1126

BSNT_03613___   1124 AGGGGATGAGCGGAAGTCCGATTATTCAAAATGGAAAAGTGATCGGTGCT   1173
                     |.||||||||||||||.|||||.||.|||||.|||||..|.||.||.||.
BL01519___spo   1127 AAGGGATGAGCGGAAGCCCGATCATCCAAAACGGAAAGATCATTGGCGCC   1176

BSNT_03613___   1174 GTCACCCATGTATTTGTAAATGACCCGACAAGCGGCTACGGTGTTCATAT   1223
                     ||.|||||.||.||.||.|||||.|||||.|||||.||||||||.|||||
BL01519___spo   1177 GTAACCCACGTTTTCGTCAATGATCCGACGAGCGGGTACGGTGTGCATAT   1226

BSNT_03613___   1224 TGAATGGATGCTGTCAGAAGCAGGAATCGATATTTACGGAAAAGAAAAAG   1273
                     |||||||||||||||.|||||.||||||||||||||...|||||||||||
BL01519___spo   1227 TGAATGGATGCTGTCTGAAGCGGGAATCGATATTTATAAAAAAGAAAAAG   1276

BSNT_03613___   1274 CAAGCTGA   1281
                     ||||||||
BL01519___spo   1277 CAAGCTGA   1284


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