Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03588 and BL01498
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_03588___bkdR.1.5803.seq
# -bsequence dna-align/BL01498___bkdR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03588___bkdR-BL01498___bkdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03588___bkdR-BL01498___bkdR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03588___bkdR
# 2: BL01498___bkdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2139
# Identity: 1549/2139 (72.4%)
# Similarity: 1549/2139 (72.4%)
# Gaps: 132/2139 ( 6.2%)
# Score: 5486.0
#
#
#=======================================
BSNT_03588___ 1 ATGCAAAAGGTACTGATAGTAGGTGCCGGCAAAAGGGGAACGGCGTTATT 50
||||||||.||||||||.||.|||||.||.|||.||||.||.||..|.||
BL01498___bkd 1 ATGCAAAAAGTACTGATCGTTGGTGCTGGAAAAGGGGGGACCGCCCTCTT 50
BSNT_03588___ 51 ACATATTCTGATTAAAACAGCCATCATAGATATCATTGCCGTAGTTGACA 100
..||.|.|||.|.||||||...|..||..|||||...||.||..|.||.|
BL01498___bkd 51 GGATTTGCTGCTGAAAACAAAGACGATGCATATCGAGGCGGTCATCGATA 100
BSNT_03588___ 101 AAGACCCCGAGGC-GCCGGGATT-----------GAAAGAAGCAGAACAG 138
||.|.||.||.|| .|||||.|| |||| |||..
BL01498___bkd 101 AAAATCCGGAAGCTCCCGGGCTTTTCGTCGCGCAGAAA-------AACGA 143
BSNT_03588___ 139 TATGGGATTGCCGTATCATCT-GATTGGAAACCTTACAT-ACAACAAAAA 186
|||.|.|..|.| .|| ||.||||..||.||||| |||..|.|.|
BL01498___bkd 144 TATCGAAACGGC------ACTCGACTGGACGCCATACATCACAGAACAGA 187
BSNT_03588___ 187 CCGGATATCGTCATTCATACTACCGGCGATCAAGCCGTGTTTGACGAGCT 236
.| ||.|||.|||||.|.||.|||||.||....|.||||||..|..||||
BL01498___bkd 188 TC-GACATCATCATTGAGACGACCGGAGACGCCGGCGTGTTAAAGCAGCT 236
BSNT_03588___ 237 CCTTCAAAGAAAGCATGA-AGATACCATTGTCATGCCGGGAAAAATGGCA 285
..|.|.||.||||||.|| ||| ||.||.||..||||||||....|.||.
BL01498___bkd 237 GATGCGAAAAAAGCACGACAGA-ACGATCGTGGTGCCGGGATCGCTCGCT 285
BSNT_03588___ 286 TACATCGTTTTTCAGCTGATGGAAGAAAAGCAGCACCTGATTCAAATGCT 335
||.|||.|.|.||||||||||.|.|||||||||||.||.||.||||||.|
BL01498___bkd 286 TATATCATCTCTCAGCTGATGAATGAAAAGCAGCAGCTCATCCAAATGTT 335
BSNT_03588___ 336 AAAAGAGCAAACCTATAAATATGACAGAATTTTTAATTCCACCCATGATG 385
|||||||||.||.||||||.|.|||.|.|||||.||.||.|...||||.|
BL01498___bkd 336 AAAAGAGCAGACGTATAAACACGACCGTATTTTCAACTCGATGAATGACG 385
BSNT_03588___ 386 GAATGATTTTTATTGATATCAATGAAGAAATCATTCTCTTTAACCATATG 435
|.|||||||||||.||.||.||.|||||.||||||.|.||||||.|.|||
BL01498___bkd 386 GCATGATTTTTATCGACATTAACGAAGAGATCATTTTGTTTAACAAAATG 435
BSNT_03588___ 436 GCCGAAAAAATGGTCGGGAAAAAACGTGAG-GAAGTCATTGGGCGCCCA- 483
||.||....|||..|||.|.|||.|| .|| ||||..|| ||.|||
BL01498___bkd 436 GCGGAGGTTATGACCGGAACAAAGCG-CAGCGAAGCGAT----CGGCCAG 480
BSNT_03588___ 484 -ATA---AAAGAAGTGATTCCGAGCACGAAGATGCCGCGGATTTTAAAAA 529
||| |||| .|||||.||||..||||||.|||||||.|||.|.||.|
BL01498___bkd 481 CATATTCAAAG-CGTGATCCCGACGACGAAGCTGCCGCGTATTCTCAACA 529
BSNT_03588___ 530 CAAGAGTGCCTGAATACAACCAGAAGCAGCTGTT--AGGCGATCATTTGC 577
|.||||.||||||.||..|.||.||.||..|..| |..|||.|| .||
BL01498___bkd 530 CGAGAGAGCCTGAGTATCATCAAAAACAATTTCTCCATCCGAACA--GGC 577
BSNT_03588___ 578 AAATTGTGACCACAAGGCTGCCGATTATTGATGAAGGCGG-ACGTCTGCT 626
|.|||||.||.||..|..|.||||||||||||||.||.|| ||| ||.||
BL01498___bkd 578 AGATTGTCACGACCCGAATTCCGATTATTGATGACGGAGGAACG-CTCCT 626
BSNT_03588___ 627 CGGGGCTCTTTGTGTTTTTAAAGATATCACTGATGCGGTCGAGCTGGCAG 676
||||||.||..|..|.|||||.||.||.||.|||||||||||||||||.|
BL01498___bkd 627 CGGGGCGCTCAGCATATTTAAGGACATTACCGATGCGGTCGAGCTGGCTG 676
BSNT_03588___ 677 AGGAAGTGACCAACTTAAAGCAGGTCCGTACGATGCTGGAGGCAATTATT 726
|.||.|||||||||.|.|||.|.|||.|.||||||||.||.||.||.|||
BL01498___bkd 677 AAGAGGTGACCAACCTGAAGGAAGTCAGAACGATGCTTGAAGCGATCATT 726
BSNT_03588___ 727 CAATCCTCCGATGAGGCGATTTCTGTCGTTGATGAAAACGGCATCGGCCT 776
|||||.||||||||.||||||||.||||||||.||||||||.|.|||..|
BL01498___bkd 727 CAATCTTCCGATGAAGCGATTTCGGTCGTTGACGAAAACGGAAACGGAAT 776
BSNT_03588___ 777 GCTAATCAATAAAGCGTATACGAAAATGACGGGGCTTTCTGA-AAAAG-- 823
|.|.|||||.|..||.||||||||.|||||.|| ||||| |||||
BL01498___bkd 777 GATGATCAACAGGGCATATACGAAGATGACAGG----TCTGACAAAAGAC 822
BSNT_03588___ 824 -AAGTCATCGGCAAGCCTGCAAACACTGATATTTCCGAAGGCGAAAGCAT 872
|.||.|||||.|||||.||.||.||.||.||.||.||||||||.|||||
BL01498___bkd 823 CAGGTGATCGGGAAGCCGGCTAATACCGACATATCTGAAGGCGAGAGCAT 872
BSNT_03588___ 873 GCATTTAAAGGTGCTTGAAACAAGACGTCCTGTCCGCGGTGTCAGAATGA 922
||||||.||.|||||.|||||.||.||.||||||.|.||.||||||||||
BL01498___bkd 873 GCATTTGAAAGTGCTCGAAACGAGGCGCCCTGTCAGAGGGGTCAGAATGA 922
BSNT_03588___ 923 AGGTCGGCCCGAATGAAAAAGAAGTGATCGTTAATGTAGCACCGGTGATT 972
|.||||||||||||.||||||||||||||||.|||||.||.|||.|.||.
BL01498___bkd 923 AAGTCGGCCCGAATAAAAAAGAAGTGATCGTCAATGTTGCGCCGATTATC 972
BSNT_03588___ 973 GTGGACGGGATTTTGAAAGGCAGCGTCGGCGTGATTCACGATGTTTCCGA 1022
||.|||||.|||||.|||||.|||||||||||.||||||||.||.||.||
BL01498___bkd 973 GTCGACGGCATTTTAAAAGGGAGCGTCGGCGTCATTCACGACGTATCTGA 1022
BSNT_03588___ 1023 AATTAAAATGCTGACAGCGGAGCTTAATCGCGCCAGACAAATTATTCGCA 1072
||||.||..|||.|||...|||||.||..|.||..|.||.|||||.||.|
BL01498___bkd 1023 AATTCAATCGCTCACAAACGAGCTGAACAGAGCACGGCAGATTATCCGTA 1072
BSNT_03588___ 1073 CGCTTGAAGCGAAATACACGTTTGACGACATTATCGGCAAAAGCGAGCAA 1122
|.|||||.||||||||.||.||||.||||||.|||||...|||||||||.
BL01498___bkd 1073 CACTTGAGGCGAAATATACATTTGCCGACATCATCGGGTCAAGCGAGCAG 1122
BSNT_03588___ 1123 ATGCTGGTTGCGCTTGAGCAGGCGAAGCTCGGTGCGAAAACACCGGCAAC 1172
|||||.||.|||||.||.||||||||..|.||.|||||.||.||.||.||
BL01498___bkd 1123 ATGCTCGTCGCGCTGGAACAGGCGAAATTGGGGGCGAAGACGCCTGCGAC 1172
BSNT_03588___ 1173 CATCTTGCTGCGCGGGGAATCAGGAACAGGAAAAGAACTGTTCGCCCATG 1222
.||.||||||.|.||.|||||.|||||.||.|||||.||.||.|||||||
BL01498___bkd 1173 GATTTTGCTGAGAGGCGAATCGGGAACGGGTAAAGAGCTTTTTGCCCATG 1222
BSNT_03588___ 1223 CCATCCATAACGAAAGTGACCGGAAATACAATAAATTTATTCGCGTGAAT 1272
||||.|||||||||||||||||.||.||.|||||.|||.|.|||||.|||
BL01498___bkd 1223 CCATACATAACGAAAGTGACCGAAAGTATAATAAGTTTGTCCGCGTCAAT 1272
BSNT_03588___ 1273 TGTGCAGCCCTTTCTGAAAACCTGCTCGAATCAGAATTGTTCGGCTATGA 1322
|||||.|||.|.||.|||...|||||.||||||||..|.|||||||||||
BL01498___bkd 1273 TGTGCGGCCATATCGGAATCACTGCTTGAATCAGAGCTTTTCGGCTATGA 1322
BSNT_03588___ 1323 GGATGGCGCGTTTTCAGGAGCGAAGCGCGGCGGTAAAAAGGGTTTATTTG 1372
|||.|||||.||||||||.|||...||||||||.|||||.||.||.||||
BL01498___bkd 1323 GGAAGGCGCTTTTTCAGGTGCGCGCCGCGGCGGGAAAAAAGGATTCTTTG 1372
BSNT_03588___ 1373 AGGAAGCAAATAACGGCAGTATTTTCTTAGATGAAATCGGTGAGCTGACA 1422
|.|||||.||.|||||.||.||||||||.|||||||||||.|||||..|.
BL01498___bkd 1373 AAGAAGCGAACAACGGAAGCATTTTCTTGGATGAAATCGGCGAGCTCTCG 1422
BSNT_03588___ 1423 CAAAATATGCAGGCCAAATTGCTACGCGTCCTTCAAGAAAAGGAAATCGT 1472
|.|||.|..|||||.||..|.||.|||||.|||||.|||||.||||||||
BL01498___bkd 1423 CTAAACACACAGGCGAAGCTCCTCCGCGTTCTTCAGGAAAAAGAAATCGT 1472
BSNT_03588___ 1473 CAGAGTGGGCGGCACGAAAGCGATCCCTGTCAATGTCAGAGTGATCGCGG 1522
||||||.|||||.||.|||.||||||||||.||.|||.|.||.|||||||
BL01498___bkd 1473 CAGAGTCGGCGGGACCAAACCGATCCCTGTGAACGTCCGGGTCATCGCGG 1522
BSNT_03588___ 1523 CGACAAATGTAAATATTGAAAAGGCGATGGC----GGACGGAACATTCCG 1568
||||.||.||.|||||||||||||||.|.|| ||.||| ||.||
BL01498___bkd 1523 CGACTAACGTCAATATTGAAAAGGCGCTCGCTGAAGGCCGG----TTTCG 1568
BSNT_03588___ 1569 GGAAGACCTGTATTACCGGATCAACCGCTATCCGATCTCCATCCCGCCTT 1618
.||||||.||||.|||||||||||.|||||||||||.||.||.|||||..
BL01498___bkd 1569 CGAAGACTTGTACTACCGGATCAATCGCTATCCGATATCGATTCCGCCGC 1618
BSNT_03588___ 1619 TGCGGCAGCGGTTGGAGGACATTGAAGCATTGAGCGTCAGAC---TTATC 1665
|..|.||||||...||||||||||||||.||||| |||.| |.||.
BL01498___bkd 1619 TCAGACAGCGGAAAGAGGACATTGAAGCCTTGAG---CAGGCATTTGATA 1665
BSNT_03588___ 1666 CAAAAGATCAACCGGGATTACGGCAGGAATGTAAAAGGGCT--------- 1706
...||||||||||..||.|||||..|.||||||||.|||||
BL01498___bkd 1666 GGGAAGATCAACCAAGAGTACGGGCGCAATGTAAAGGGGCTTACGAAAAA 1715
BSNT_03588___ 1707 ----CTCACAGC-----AAGCCTTGCGCGCCTTATCTGCCTACCATTGGC 1747
||||.|.| || ||||| ..|.||||
BL01498___bkd 1716 CGCCCTCAAATCGCTAAAA-----GCGCG-------------GAAGTGGC 1747
BSNT_03588___ 1748 CTGGGAATGTCCGGGAGCTTGAAAATGTCCTTGGACGAGCCATGATTTTT 1797
|.|||||||||.|.|||||||||||||||||.|..||.||.|||||||||
BL01498___bkd 1748 CGGGGAATGTCAGAGAGCTTGAAAATGTCCTCGAGCGGGCGATGATTTTT 1797
BSNT_03588___ 1798 CTGAATCCGCATATGGAATGGATTGAAAAAGATCA-CTTGCCTGTATTCG 1846
.|.||.|||||.||||||||||||||...|||.|| ||| ||||.|...|
BL01498___bkd 1798 TTAAAACCGCAAATGGAATGGATTGATCTAGAACATCTT-CCTGAAGCGG 1846
BSNT_03588___ 1847 AACTT--GAGCAAAAAGAAAATGACACAGATCAG-GGAA-CAGGTTTTAA 1892
|.|.| |||.|||||| | |||| |.|| ..||
BL01498___bkd 1847 ACCGTCCGAGAAAAAAG----------------GTGGAAGCCGG--CGAA 1878
BSNT_03588___ 1893 --TTTTCCGGATATTGAAGGCGAAAAGCTGTCTGTCGCAGTAGAAAAATT 1940
|||.||.||.|||||||..|||||||||||||..||.||.|||...||
BL01498___bkd 1879 GCTTTCCCTGAAATTGAAGATGAAAAGCTGTCTGATGCGGTCGAACGGTT 1928
BSNT_03588___ 1941 TGAAGCGCATTTGATCCAGCAAACGCTTGAAAAGCATCATTTTAACCGGA 1990
||||||.|||.|.||..|..|||||||||||||||||||.|.||||.|.|
BL01498___bkd 1929 TGAAGCTCATATCATTAAAGAAACGCTTGAAAAGCATCAATATAACAGAA 1978
BSNT_03588___ 1991 CAAAAACAGCAAAAGCTCTCGGTGTCAGCATTCGGAACTTATATTACAAA 2040
|.|||||.|||||||||||.||..||||||||||.|||.|.|||||||||
BL01498___bkd 1979 CGAAAACGGCAAAAGCTCTTGGAATCAGCATTCGCAACCTCTATTACAAA 2028
BSNT_03588___ 2041 ATGGATAAATATGGCCTTGCAAATGAAGGCATGCAATAA 2079
|||||||||||...|||||||||.||..|||||||||||
BL01498___bkd 2029 ATGGATAAATACAACCTTGCAAAAGATAGCATGCAATAA 2067
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