Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05747 and BL01496
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05747___ywgB.1.5803.seq
# -bsequence dna-align/BL01496___ywgB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05747___ywgB-BL01496___ywgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05747___ywgB-BL01496___ywgB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05747___ywgB
# 2: BL01496___ywgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity: 247/552 (44.7%)
# Similarity: 247/552 (44.7%)
# Gaps: 231/552 (41.8%)
# Score: 488.5
#
#
#=======================================
BSNT_05747___ 1 ATGAA--AAT-GAAATC-AGGAATGGAGCAGGCGGTTTCTGTGC------ 40
||||| |.| ||||.| |.||| ||.|||
BL01496___ywg 1 ATGAAGTATTCGAAAGCAACGAA---------------CTATGCCCTTCA 35
BSNT_05747___ 41 -----TGCTGTTACTGTCA-----CGGC-----------TGCCG--GTAC 67
||||.||.||..|| ||.| ||.|| ||||
BL01496___ywg 36 CACTATGCTCTTTCTTGCAGCAGGCGCCCCAAATACATTTGTCGGTGTAC 85
BSNT_05747___ 68 AG--GCTTCTTTG-----ACGTC-AGAGGCTATAAGCCAGCGATTGCGCG 109
|| | ||| |||.| ||||| |||...|||
BL01496___ywg 86 AGCAG-----TTGGCAGAACGGCAAGAGG-TATCGCCCA----------- 118
BSNT_05747___ 110 TGTCTCCGTCTTACTTGAA---------GAAGCTGATGAGAACATTGGTT 150
|||.||..|.||| |||||| |..
BL01496___ywg 119 ------CGTATTTATCGAAAATTTTAACGAAGCT-------------GGC 149
BSNT_05747___ 151 CAAGCCGG------TTTGGCAGAATC--CTTACCAGGGACGAAGGGCGGT 192
||||.||| || ||||| ||| ||||..|.||.|||||.
BL01496___ywg 150 CAAGGCGGGAATGATT-----GAATCCGCTT--CAGGCGCCAATGGCGGA 192
BSNT_05747___ 193 TTTACCCTGACGAAGCCTTTGGCTGACATTACGCTTTATGATGTTTATCA 242
|.||..||.|.|..|..||.||..||||||.||.||..||||.||..|||
BL01496___ywg 193 TATAGGCTAAAGCGGAATTGGGAAGACATTTCGTTTCTTGATATTATTCA 242
BSNT_05747___ 243 AGCGGTCGAAGGCAGAG-------GTTCGATGTATCAGGGGAAAGGCTTG 285
.||..|.|||||.|.|| |||||||
BL01496___ywg 243 CGCAATTGAAGGTACAGCCTCCTTGTTCGAT------------------- 273
BSNT_05747___ 286 CTGCAATCTGTATTTGA-----GGGT--GAAAGTCACTGTGTGCTGGAGA 328
|||| |.|||| ||.| ||| ||||||.|..|||
BL01496___ywg 274 -TGCA------ACTTGAACCATGGATCAGAA------TGTGTGATTCAGA 310
BSNT_05747___ 329 CAGTCATGGCGGAAATC----GAGGAT-AAATGGTCCAATCTTATGAGAG 373
..||.|||| .||| ||.||| ||||||
BL01496___ywg 311 AGGTGATGG----TATCTGCAGAAGATGAAATGG---------------- 340
BSNT_05747___ 374 AAGAATCCTTGCAG-CATGTTATGGACAGAGTCGGGGAATTGTATGATCT 422
|||||..||..|| || |||.| ||.|.|.|||.||
BL01496___ywg 341 -AGAATTATTTGAGACA--------ACAAA-------AAATATCTGACCT 374
BSNT_05747___ 423 TG---AAAAAATAGATGATTGGGTAATCAAGCAAGTGAAAGGGCAATTGT 469
|| ||||||||..|| |||.|| .||||
BL01496___ywg 375 TGCCAAAAAAATAACTG-TTGAGT---------TGTGA------------ 402
BSNT_05747___ 470 AA 471
BL01496___ywg 402 -- 402
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