Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03182 and BL01462
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_03182___yodC.1.5803.seq
# -bsequence dna-align/BL01462___yodC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03182___yodC-BL01462___yodC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03182___yodC-BL01462___yodC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03182___yodC
# 2: BL01462___yodC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 636
# Identity: 443/636 (69.7%)
# Similarity: 443/636 (69.7%)
# Gaps: 42/636 ( 6.6%)
# Score: 1447.5
#
#
#=======================================
BSNT_03182___ 1 ATG-------ACGAATA-----CTCTGGATGTTTTAAAAGCACGTGCATC 38
||| |.|||.| ||||..|..||.|..|||..|||.|.||
BL01462___yod 1 ATGTCTTCACAAGAAAACACCGCTCTCAACATTCTGGAAGAGCGTACTTC 50
BSNT_03182___ 39 TGTAAAGGAATATGATACAAATGCCCCGATCTCTAAGGAGGAGCTGA--- 85
..|.||.||||||||.||||..|...||||.||.||.||||||||||
BL01462___yod 51 GATTAAAGAATATGACACAAGCGTTTCGATTTCCAAAGAGGAGCTGACAA 100
BSNT_03182___ 86 -----CTGAGCTATTAGACTTTGCCGCTAAAGCGCCTTCTGCTTGGAACC 130
|||||| ||.| ||.|.||.||.||.||.||.|||||.|
BL01462___yod 101 AGCTGCTGAGC-ATCA-------CCACAAAGGCTCCGTCAGCCTGGAATC 142
BSNT_03182___ 131 TTCAGCATTGGCATTTTACAGTATTCCACAGCGATGAATCAAAAGCGGAG 180
|.|||||.||||||||||||||.||.||||||.|.||||||||||....|
BL01462___yod 143 TGCAGCACTGGCATTTTACAGTCTTTCACAGCCAGGAATCAAAAGATAGG 192
BSNT_03182___ 181 CTTCTTCCTGTAGCGTATAATCAAAAACAAATCGTTGAGTCTTCTGCTGT 230
||.|||||..|.||||..||.|||||.|||.||..|.||.|.|||||.||
BL01462___yod 193 CTCCTTCCGATCGCGTTCAACCAAAAGCAAGTCAGTCAGGCCTCTGCGGT 242
BSNT_03182___ 231 TGTTGCCATTTTAGGCGATTTAAAGGCAAATGAAAACGGTGAAGAAGTTT 280
.||.||..|..|.||.||.|||.|.||.|||...||||||||||..||.|
BL01462___yod 243 CGTAGCGGTGCTCGGGGACTTACAAGCGAATCTGAACGGTGAAGCCGTAT 292
BSNT_03182___ 281 ATGCCGAATTAGC--AAGCCAAGGCTATATTACGGATGAAATCAAACAAA 328
|.|.|....|.|| |||| |||||||||.||.||.|||||||||.|.|
BL01462___yod 293 ACGGCCCTCTGGCAGAAGC--AGGCTATATGACTGAAGAAATCAAAAACA 340
BSNT_03182___ 329 CATTGCTCGGCCAAATCAACGGTGCTTACCAAAGCGAGC-AATTCGCACG 377
|..|||||||.|||||||||||.|||||.||||.| ||| .|||.|||.|
BL01462___yod 341 CGCTGCTCGGACAAATCAACGGCGCTTATCAAAAC-AGCGGATTTGCAAG 389
BSNT_03182___ 378 TGATTCCGCTTTCTTAAATGCTTCTTTAGCTGCTATGCAGCTTATGATTG 427
.||..||||.||...|||.||.|||.||||.||.||||||||.|||||.|
BL01462___yod 390 AGACGCCGCGTTTACAAACGCATCTCTAGCAGCCATGCAGCTGATGATCG 439
BSNT_03182___ 428 CCGCAAAAGCAAAAGGTTATGACACTTGCGCAATTGGCGGATTTAACAAA 477
|.||.|||||||..||.||||||||.||||||||.|||||.|||.||||.
BL01462___yod 440 CAGCCAAAGCAATGGGCTATGACACATGCGCAATGGGCGGCTTTGACAAG 489
BSNT_03182___ 478 G-AGCAGTTCCAAAAGCAATTTGATATCAGTGAGCGCTATGTTCCGGTTA 526
| ||||.||...|||| ||||..|.|||..|||.||||||||.|||||||
BL01462___yod 490 GAAGCATTTGTGAAAG-AATTCAACATCGATGAACGCTATGTACCGGTTA 538
BSNT_03182___ 527 TGCTAATTTCAATCGGCAAAG-CAGTGAAGCCTGCGCATCAAAGCAACCG 575
||||.|||||..|||| |||| |.||.||.||||||||..|||||||.||
BL01462___yod 539 TGCTGATTTCGGTCGG-AAAGCCGGTCAAACCTGCGCACAAAAGCAATCG 587
BSNT_03182___ 576 TCTGCCG--CTTTCAAAAGTATCAACTTGGCTGTAA 609
|.| || .|.||..|.|||||.||.|||||||||
BL01462___yod 588 TTT--CGATGTGTCTGACGTATCTACATGGCTGTAA 621
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