Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03196 and BL01457

See Amino acid alignment / Visit BSNT_03196 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:52
# Commandline: needle
#    -asequence dna-align/BSNT_03196___yodH.1.5803.seq
#    -bsequence dna-align/BL01457___yodH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03196___yodH-BL01457___yodH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03196___yodH-BL01457___yodH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03196___yodH
# 2: BL01457___yodH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 792
# Identity:     468/792 (59.1%)
# Similarity:   468/792 (59.1%)
# Gaps:         171/792 (21.6%)
# Score: 1224.5
# 
#
#=======================================

BSNT_03196___      1 TTGAGCCGA-TATTTAGAAATGCTGTCCTTATTCGGTGTCGCAGGGGCGC     49
                     ||||| ||| ||||||||.|||||..||...|||||.|||.||...||.|
BL01457___yod      1 TTGAG-CGATTATTTAGACATGCTCGCCAGCTTCGGCGTCTCATCCGCTC     49

BSNT_03196___     50 ACCCAGGCGGACTGGCTTTTTCAAAAGCGGT-CTTGCAAAAGGCTGC---     95
                     |.||.|||||..||.|..|.|||||.||.|| ||.||.||||.|.||   
BL01457___yod     50 ATCCCGGCGGGATGTCCCTGTCAAAGGCAGTGCTCGCCAAAGCCGGCATC     99

BSNT_03196___     96 -ACCCTCTCCGAATCAGCCGATTCTTGATGCCGGATGCGGAACAGGACAA    144
                      |||||     .|.|||||||||||||||||.||.||||||||.||.||.
BL01457___yod    100 GACCCT-----GAGCAGCCGATTCTTGATGCAGGCTGCGGAACCGGCCAG    144

BSNT_03196___    145 ACGGCGGCTTATTTAGGACATTTGCTGTATCCTGTAACAGTCGTTGATAA    194
                     ||.||.||||||||.||.||..|.||||.||||||.||.|.|.|||||..
BL01457___yod    145 ACCGCCGCTTATTTGGGTCAGCTTCTGTTTCCTGTCACTGCCCTTGATGC    194

BSNT_03196___    195 AGATCCTATTATGCTTGAGAAAG--CGA---------AAAAAAGATTTGC    233
                     .||.||..|.|||.|.||.||||  |||         ||||||       
BL01457___yod    195 CGACCCGGTCATGATCGATAAAGCCCGACAGCGTTTTAAAAAA-------    237

BSNT_03196___    234 GAATGAAGGGCTTGCCATCCCTGCATATCAG----------GCGGAGCTG    273
                         |||..||||.||||.||.|| |.||.|          |.|||..||
BL01457___yod    238 ----GAACAGCTTTCCATTCCGGC-TGTCCGCTCTCCACTTGAGGAAATG    282

BSNT_03196___    274 GAACATCTCCCGTTTTCTTCTGAGTCCTTTTCCTGTGTCCTGTCAGAATC    323
                              ||||||...|||||...||||.|||||||..|..|.|||||
BL01457___yod    283 ---------CCGTTTCAGTCTGAAAGCTTTGCCTGTGTATTAACTGAATC    323

BSNT_03196___    324 GGTCCTCAGTTTTTCACGCCTGACATCC--TCT-CTT--CAAGAAATTTC    368
                     .||.||.||.||..||     .|.||||  ||| |||  ||.||||  ||
BL01457___yod    324 TGTGCTGAGCTTCACA-----AATATCCGGTCTGCTTTACAGGAAA--TC    366

BSNT_03196___    369 AAGAG--TTTTAAAACCCGGCGGGATGCTGATTGGTATCGAAG-CTGCTT    415
                     ..|.|  |||||||||||||.|||||||||.|.|..||||||| ||||.|
BL01457___yod    367 CGGCGGATTTTAAAACCCGGAGGGATGCTGGTCGCGATCGAAGTCTGCCT    416

BSNT_03196___    416 TAA--AA--AAAC-----------CGATGCCCCCTGCAGAAAAGAAGCAA    450
                     |||  ||  ||||           |||.||         ||||.||| ||
BL01457___yod    417 TAAGGAAGGAAACGCACTGACAGACGAAGC---------AAAAAAAG-AA    456

BSNT_03196___    451 ATGATGGATTTTTACGGATTTACTTGC-TTACATGAAGAAAGCGAATGGC    499
                     ||.|.|||.|||||||||||.|| .|| |||.||||.||....||.|||.
BL01457___yod    457 ATCACGGAATTTTACGGATTCAC-CGCATTATATGACGAGGATGAGTGGG    505

BSNT_03196___    500 ATAAACTCCT-----AAGATCCTATGGCTTTCAAAAAACAGAAGCGA-TG    543
                     ..||..||||     ||||    |.|..|||||||          || ||
BL01457___yod    506 TCAATGTCCTTCGAGAAGA----AGGATTTTCAAA----------GATTG    541

BSNT_03196___    544 ACACTTC-TTCC---------GGAAGA--CATGGAATTTGAACC------    575
                     |||  || ||||         ||||||  || |||    ||.||      
BL01457___yod    542 ACA--TCATTCCTGTCGTATTGGAAGATGCA-GGA----GACCCGGATGA    584

BSNT_03196___    576 AACCACAGAAATGGATTTATCGCAAACGATTGATCC--CATCTATTACGA    623
                     ..||...|||||||||.|.||||...|.|||  |||  ||...|.||.||
BL01457___yod    585 CGCCGTTGAAATGGATCTGTCGCCTGCAATT--TCCGACAAAGACTATGA    632

BSNT_03196___    624 TACGCTTCAAACACATTATCAGCTCATGCAGTT----------ATATAGT    663
                     .|||.|..|||.|||         |.|||| ||          |||..|.
BL01457___yod    633 AACGATGGAAAAACA---------CCTGCA-TTACCTGGAAAAATACCGG    672

BSNT_03196___    664 GAGTACATGGGTCATTGTATTTTTATCGCGTACA---AGTAA    702
                     ||.|...|.|.||||..|||||||||..|  |||   | |||
BL01457___yod    673 GACTCTCTCGATCATATTATTTTTATATC--ACATCTA-TAA    711


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