Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03196 and BL01457
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_03196___yodH.1.5803.seq
# -bsequence dna-align/BL01457___yodH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03196___yodH-BL01457___yodH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03196___yodH-BL01457___yodH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03196___yodH
# 2: BL01457___yodH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 792
# Identity: 468/792 (59.1%)
# Similarity: 468/792 (59.1%)
# Gaps: 171/792 (21.6%)
# Score: 1224.5
#
#
#=======================================
BSNT_03196___ 1 TTGAGCCGA-TATTTAGAAATGCTGTCCTTATTCGGTGTCGCAGGGGCGC 49
||||| ||| ||||||||.|||||..||...|||||.|||.||...||.|
BL01457___yod 1 TTGAG-CGATTATTTAGACATGCTCGCCAGCTTCGGCGTCTCATCCGCTC 49
BSNT_03196___ 50 ACCCAGGCGGACTGGCTTTTTCAAAAGCGGT-CTTGCAAAAGGCTGC--- 95
|.||.|||||..||.|..|.|||||.||.|| ||.||.||||.|.||
BL01457___yod 50 ATCCCGGCGGGATGTCCCTGTCAAAGGCAGTGCTCGCCAAAGCCGGCATC 99
BSNT_03196___ 96 -ACCCTCTCCGAATCAGCCGATTCTTGATGCCGGATGCGGAACAGGACAA 144
||||| .|.|||||||||||||||||.||.||||||||.||.||.
BL01457___yod 100 GACCCT-----GAGCAGCCGATTCTTGATGCAGGCTGCGGAACCGGCCAG 144
BSNT_03196___ 145 ACGGCGGCTTATTTAGGACATTTGCTGTATCCTGTAACAGTCGTTGATAA 194
||.||.||||||||.||.||..|.||||.||||||.||.|.|.|||||..
BL01457___yod 145 ACCGCCGCTTATTTGGGTCAGCTTCTGTTTCCTGTCACTGCCCTTGATGC 194
BSNT_03196___ 195 AGATCCTATTATGCTTGAGAAAG--CGA---------AAAAAAGATTTGC 233
.||.||..|.|||.|.||.|||| ||| ||||||
BL01457___yod 195 CGACCCGGTCATGATCGATAAAGCCCGACAGCGTTTTAAAAAA------- 237
BSNT_03196___ 234 GAATGAAGGGCTTGCCATCCCTGCATATCAG----------GCGGAGCTG 273
|||..||||.||||.||.|| |.||.| |.|||..||
BL01457___yod 238 ----GAACAGCTTTCCATTCCGGC-TGTCCGCTCTCCACTTGAGGAAATG 282
BSNT_03196___ 274 GAACATCTCCCGTTTTCTTCTGAGTCCTTTTCCTGTGTCCTGTCAGAATC 323
||||||...|||||...||||.|||||||..|..|.|||||
BL01457___yod 283 ---------CCGTTTCAGTCTGAAAGCTTTGCCTGTGTATTAACTGAATC 323
BSNT_03196___ 324 GGTCCTCAGTTTTTCACGCCTGACATCC--TCT-CTT--CAAGAAATTTC 368
.||.||.||.||..|| .|.|||| ||| ||| ||.|||| ||
BL01457___yod 324 TGTGCTGAGCTTCACA-----AATATCCGGTCTGCTTTACAGGAAA--TC 366
BSNT_03196___ 369 AAGAG--TTTTAAAACCCGGCGGGATGCTGATTGGTATCGAAG-CTGCTT 415
..|.| |||||||||||||.|||||||||.|.|..||||||| ||||.|
BL01457___yod 367 CGGCGGATTTTAAAACCCGGAGGGATGCTGGTCGCGATCGAAGTCTGCCT 416
BSNT_03196___ 416 TAA--AA--AAAC-----------CGATGCCCCCTGCAGAAAAGAAGCAA 450
||| || |||| |||.|| ||||.||| ||
BL01457___yod 417 TAAGGAAGGAAACGCACTGACAGACGAAGC---------AAAAAAAG-AA 456
BSNT_03196___ 451 ATGATGGATTTTTACGGATTTACTTGC-TTACATGAAGAAAGCGAATGGC 499
||.|.|||.|||||||||||.|| .|| |||.||||.||....||.|||.
BL01457___yod 457 ATCACGGAATTTTACGGATTCAC-CGCATTATATGACGAGGATGAGTGGG 505
BSNT_03196___ 500 ATAAACTCCT-----AAGATCCTATGGCTTTCAAAAAACAGAAGCGA-TG 543
..||..|||| |||| |.|..||||||| || ||
BL01457___yod 506 TCAATGTCCTTCGAGAAGA----AGGATTTTCAAA----------GATTG 541
BSNT_03196___ 544 ACACTTC-TTCC---------GGAAGA--CATGGAATTTGAACC------ 575
||| || |||| |||||| || ||| ||.||
BL01457___yod 542 ACA--TCATTCCTGTCGTATTGGAAGATGCA-GGA----GACCCGGATGA 584
BSNT_03196___ 576 AACCACAGAAATGGATTTATCGCAAACGATTGATCC--CATCTATTACGA 623
..||...|||||||||.|.||||...|.||| ||| ||...|.||.||
BL01457___yod 585 CGCCGTTGAAATGGATCTGTCGCCTGCAATT--TCCGACAAAGACTATGA 632
BSNT_03196___ 624 TACGCTTCAAACACATTATCAGCTCATGCAGTT----------ATATAGT 663
.|||.|..|||.||| |.|||| || |||..|.
BL01457___yod 633 AACGATGGAAAAACA---------CCTGCA-TTACCTGGAAAAATACCGG 672
BSNT_03196___ 664 GAGTACATGGGTCATTGTATTTTTATCGCGTACA---AGTAA 702
||.|...|.|.||||..|||||||||..| ||| | |||
BL01457___yod 673 GACTCTCTCGATCATATTATTTTTATATC--ACATCTA-TAA 711
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