Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03168 and BL01446

See Amino acid alignment / Visit BSNT_03168 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:51
# Commandline: needle
#    -asequence dna-align/BSNT_03168___yojF.1.5803.seq
#    -bsequence dna-align/BL01446___yojF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03168___yojF-BL01446___yojF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03168___yojF-BL01446___yojF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03168___yojF
# 2: BL01446___yojF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 362
# Identity:     259/362 (71.5%)
# Similarity:   259/362 (71.5%)
# Gaps:          22/362 ( 6.1%)
# Score: 884.0
# 
#
#=======================================

BSNT_03168___      1 ATGAAAGCGATCATAAAAGAAGATGTGCAAGCATCTTTAGAACGATATGC     50
                     ||||||||.||.|.|||||||||||||||.||.|||||.|||..||.|..
BL01446___yoj      1 ATGAAAGCAATAAAAAAAGAAGATGTGCAGGCTTCTTTGGAAACATTTTT     50

BSNT_03168___     51 GGACCGCCCTGTATATATCCATTTAGAAACCACCACAGGTTCTTATTCAG    100
                     ..|.|..|||||.||.||.|||||.|||||.||.||.||.||.|||||.|
BL01446___yoj     51 AAATCAGCCTGTTTACATTCATTTGGAAACGACAACCGGATCGTATTCCG    100

BSNT_03168___    101 CGCACTTAA--ATGAAAAGAACATGACGGTTGTTGCGTATATTCGCAATG    148
                     ||||  |||  ||||..||||||||||.||.||.||.|||||..|.||.|
BL01446___yoj    101 CGCA--TAAAGATGAGCAGAACATGACCGTGGTGGCATATATCAGAAACG    148

BSNT_03168___    149 CAAAAGTTACTTATCAT-----CAGGCAAAAATCAAAGGCAACGGGCCTT    193
                     |.||.|     ||.|.|     |.|||.|||||||..|||.|.||.||.|
BL01446___yoj    149 CGAAGG-----TAGCCTGCTCCCGGGCCAAAATCACGGGCGAGGGACCAT    193

BSNT_03168___    194 ACCGCGTTGGCTTGAAAACAGAAGAAGGCTGGATTTATGCTGAAGGCTTG    243
                     ..||||..||.||||||||.|||||.||||||||.||.||.||||||.||
BL01446___yoj    194 TTCGCGCCGGTTTGAAAACCGAAGACGGCTGGATCTACGCCGAAGGCCTG    243

BSNT_03168___    244 ACTGAATACACGGT---AGATGAAGAAAACCGTTTATTAATGGCGGGAC-    289
                     ||.||.||.|||||   .|||||||.||  .|||..||..||.|||  | 
BL01446___yoj    244 ACGGATTATACGGTTGACGATGAAGGAA--GGTTGCTTCTTGCCGG--CT    289

BSNT_03168___    290 ATCTGCCGGGCGGTAAACTGGCTATTTCTCTGCAAATCAGCGAAAAACCA    339
                     ||.||||||||||.|||||.||.|||||.||.|||||||||.||||.|||
BL01446___yoj    290 ATTTGCCGGGCGGCAAACTCGCCATTTCGCTTCAAATCAGCAAAAAGCCA    339

BSNT_03168___    340 TTCACAGTTTAA    351
                     ||..||||.|||
BL01446___yoj    340 TTTGCAGTCTAA    351


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