Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03168 and BL01446
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_03168___yojF.1.5803.seq
# -bsequence dna-align/BL01446___yojF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03168___yojF-BL01446___yojF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03168___yojF-BL01446___yojF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03168___yojF
# 2: BL01446___yojF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 362
# Identity: 259/362 (71.5%)
# Similarity: 259/362 (71.5%)
# Gaps: 22/362 ( 6.1%)
# Score: 884.0
#
#
#=======================================
BSNT_03168___ 1 ATGAAAGCGATCATAAAAGAAGATGTGCAAGCATCTTTAGAACGATATGC 50
||||||||.||.|.|||||||||||||||.||.|||||.|||..||.|..
BL01446___yoj 1 ATGAAAGCAATAAAAAAAGAAGATGTGCAGGCTTCTTTGGAAACATTTTT 50
BSNT_03168___ 51 GGACCGCCCTGTATATATCCATTTAGAAACCACCACAGGTTCTTATTCAG 100
..|.|..|||||.||.||.|||||.|||||.||.||.||.||.|||||.|
BL01446___yoj 51 AAATCAGCCTGTTTACATTCATTTGGAAACGACAACCGGATCGTATTCCG 100
BSNT_03168___ 101 CGCACTTAA--ATGAAAAGAACATGACGGTTGTTGCGTATATTCGCAATG 148
|||| ||| ||||..||||||||||.||.||.||.|||||..|.||.|
BL01446___yoj 101 CGCA--TAAAGATGAGCAGAACATGACCGTGGTGGCATATATCAGAAACG 148
BSNT_03168___ 149 CAAAAGTTACTTATCAT-----CAGGCAAAAATCAAAGGCAACGGGCCTT 193
|.||.| ||.|.| |.|||.|||||||..|||.|.||.||.|
BL01446___yoj 149 CGAAGG-----TAGCCTGCTCCCGGGCCAAAATCACGGGCGAGGGACCAT 193
BSNT_03168___ 194 ACCGCGTTGGCTTGAAAACAGAAGAAGGCTGGATTTATGCTGAAGGCTTG 243
..||||..||.||||||||.|||||.||||||||.||.||.||||||.||
BL01446___yoj 194 TTCGCGCCGGTTTGAAAACCGAAGACGGCTGGATCTACGCCGAAGGCCTG 243
BSNT_03168___ 244 ACTGAATACACGGT---AGATGAAGAAAACCGTTTATTAATGGCGGGAC- 289
||.||.||.||||| .|||||||.|| .|||..||..||.||| |
BL01446___yoj 244 ACGGATTATACGGTTGACGATGAAGGAA--GGTTGCTTCTTGCCGG--CT 289
BSNT_03168___ 290 ATCTGCCGGGCGGTAAACTGGCTATTTCTCTGCAAATCAGCGAAAAACCA 339
||.||||||||||.|||||.||.|||||.||.|||||||||.||||.|||
BL01446___yoj 290 ATTTGCCGGGCGGCAAACTCGCCATTTCGCTTCAAATCAGCAAAAAGCCA 339
BSNT_03168___ 340 TTCACAGTTTAA 351
||..||||.|||
BL01446___yoj 340 TTTGCAGTCTAA 351
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