Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03194 and BL01439
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_03194___ctpA.1.5803.seq
# -bsequence dna-align/BL01439___ctpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03194___ctpA-BL01439___ctpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03194___ctpA-BL01439___ctpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03194___ctpA
# 2: BL01439___ctpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1478
# Identity: 993/1478 (67.2%)
# Similarity: 993/1478 (67.2%)
# Gaps: 157/1478 (10.6%)
# Score: 3137.5
#
#
#=======================================
BSNT_03194___ 1 TTGAAACGGCAATTAAAACTGTTTTTTATTGTGCTGATCACTGCAGTTGT 50
|||||||.|||.||.|||||.|||||...|||..||||.||.||.||.|.
BL01439___ctp 1 TTGAAACAGCAGTTGAAACTCTTTTTGGCTGTATTGATTACGGCCGTCGC 50
BSNT_03194___ 51 CGCTTCGGCGCTTA--CTTTATTTATTACGGGCAA------------TTC 86
|||.||.||.||.| ||||||.|..| |||||| ||
BL01439___ctp 51 CGCCTCCGCACTGACGCTTTATCTGGT--GGGCAAAGGCAGCGGCGGTT- 97
BSNT_03194___ 87 CAGTATCCTGGGCCAAAAATCAACAAGC-ACAGGAGACAGCAAGTTCGAC 135
|||||| |.|| .|| .||| |.|.|||.
BL01439___ctp 98 CAGTAT-----------ATTC----CGCTTCAG---------ATTCCGAG 123
BSNT_03194___ 136 AAATTAAATAAA----------GCGTATGAGCAAATCAAAAGTGATTATT 175
|||||..| ||| |||||.||..|||||||.||.||.||||
BL01439___ctp 124 AAATTCGA-AAAGCTGATGGCGGCGTACGACAAAATCAAGAGCGACTATT 172
BSNT_03194___ 176 ACCAAAAAACAGATGATGACAAA--TTAGTAGACGGAGCAATTAAAGGAA 223
|.|||||..||||.||||| ||| |.|.| |||||.||.||||||||.|
BL01439___ctp 173 ATCAAAATGCAGACGATGA-AAAGCTGACT-GACGGCGCGATTAAAGGGA 220
BSNT_03194___ 224 TGATTCAATCACTGGATGATCCGTATTCTACATATATGGATCAAG--AGC 271
||.||..|.|..||||||||||.|||||||||||.|||||| ||| ||
BL01439___ctp 221 TGCTTGGAGCTTTGGATGATCCATATTCTACATACATGGAT-AAGAAAG- 268
BSNT_03194___ 272 AAGCGAAATCATTCGACGAGACGATTTCAGCATCTTTTGAAGGAATCGGA 321
||||.|||...||.||.||.|..|||.||.|.|||||||||||||||||.
BL01439___ctp 269 AAGCTAAAAGCTTTGAAGAAAGCATTACATCTTCTTTTGAAGGAATCGGC 318
BSNT_03194___ 322 GCCCAAGTAGAGGAGAAAGACGGAGAAATCCTTATTGTATCCCCAATTAA 371
|||||||||||.||.|||.|.|||.||||.||.||.||..|.||.|||||
BL01439___ctp 319 GCCCAAGTAGAAGAAAAAAATGGACAAATTCTAATCGTCGCGCCTATTAA 368
BSNT_03194___ 372 AGGTTCACCTGCTGAAAAAGCCGGTATCAAACCGAGGGACCAAA-TCATT 420
|||.||.||.||.|||||||||||..|.||.|||...||..||| |||
BL01439___ctp 369 AGGATCTCCCGCAGAAAAAGCCGGCTTAAAGCCGCATGATGAAATTCA-- 416
BSNT_03194___ 421 AAGGTAAATGGA----AAAAGCGTAAAAGGCATGAATGTAAATGAAGCCG 466
|.||.|||| ||||||||||||||||.||..||.||.|||| ||
BL01439___ctp 417 ---GAAAGTGGACGGCAAAAGCGTAAAAGGCAAGACCGTCAACGAAG-CG 462
BSNT_03194___ 467 TC-GCTTTAATCCGAGGCAAAAAGGGCACAAAGGTGAAGCTGGAACTGAA 515
.| ||..|.|||||.||||||||.|||||.||.||.||.||.|..||.||
BL01439___ctp 463 ACAGCGATGATCCGCGGCAAAAAAGGCACGAATGTCAAACTTGTTCTCAA 512
BSNT_03194___ 516 CAGAGCGGGAGTGGGGAATATCGATCTTTCCATTAAGCGCGATACCATTC 565
|||.|..||.||.||..|.||||||.||.|.||||||||||||||.||||
BL01439___ctp 513 CAGGGAAGGCGTCGGCCAAATCGATGTTACGATTAAGCGCGATACGATTC 562
BSNT_03194___ 566 CTGTAGAGACTGTCTATTCAGAGATGAAAGACAACAACATTGGAGAAATT 615
|..|.||.||.||.|||||..|.||||..|||..|||.||.||.|||||.
BL01439___ctp 563 CGATCGAAACGGTTTATTCCAAAATGATCGACGGCAATATCGGTGAAATC 612
BSNT_03194___ 616 CAAATCACTTCTTTCTCTGAAACAACAGCTAAAGAGCTGACAGATGCGAT 665
|||||.||.|||||||||||||..||.||.|||||.||||||.|.||.||
BL01439___ctp 613 CAAATTACGTCTTTCTCTGAAAATACCGCAAAAGAACTGACAAAAGCCAT 662
BSNT_03194___ 666 TGACG----GTTTAGAGAAAAAAGGCGCCAAAGGCTATATT----TTAGA 707
|||.| ||.| .|||||||.||..||.| ||| .|.||
BL01439___ctp 663 TGATGACTTGTCT----GAAAAAGGTGCGGAACG----ATTCGTGCTGGA 704
BSNT_03194___ 708 CTTGAGAGGCAACCCGGGCGGCTTAATGGAACAGGCGATTACGATGAGCA 757
..|.|||||.||.||.|||||..|.|||||.||.|||||||.||||||||
BL01439___ctp 705 TCTCAGAGGAAATCCAGGCGGGCTGATGGACCAAGCGATTATGATGAGCA 754
BSNT_03194___ 758 ACCTGTTCATTGATAAAGGGAAAAACATCATGCAGGTTGAATACAAAAAC 807
||.||||..|.||||||||.||||.|||||||||||||||||.|||||||
BL01439___ctp 755 ACATGTTTGTCGATAAAGGCAAAACCATCATGCAGGTTGAATCCAAAAAC 804
BSNT_03194___ 808 GGTTCAAAAGAAGTCATGAAGGCCGAAAAAGAACGGAAAGTGACCAAGCC 857
||...|||||||||....||.||.||.||.||.||.|||||||.||||||
BL01439___ctp 805 GGAAAAAAAGAAGTGTACAAAGCTGAGAAGGAGCGAAAAGTGAACAAGCC 854
BSNT_03194___ 858 GACCGTCGTTTTAGTAAATGACGGTACAGCAAGCGCAGCCGAAATTATGG 907
||||||.|||.|.||.||.|..||.||.||||||||.||.||.||.||||
BL01439___ctp 855 GACCGTTGTTCTCGTCAACGGAGGAACGGCAAGCGCCGCTGAGATCATGG 904
BSNT_03194___ 908 CCGCTGCCCTTCATGAATCGTCAAACGTACCGTTAATCGGCGAGACGACA 957
||||.||.|||||..|.||.|||..|.|.|||.|..||||.||.|..||.
BL01439___ctp 905 CCGCAGCACTTCACCAGTCTTCAGGCATCCCGATCGTCGGTGAAAATACG 954
BSNT_03194___ 958 TTCGGAAAAGGTACAGTGCAAA---CGGCAAAAGAATATGAT-----GAT 999
||.||.|||||.||.||.|||| ||| ||| |.| ||.
BL01439___ctp 955 TTTGGGAAAGGGACGGTTCAAAATGCGG----AGA----GCTTCTCCGAC 996
BSNT_03194___ 1000 GGCTCTACTGTCAAACTGACAGTTGCCAAATGGCTGACTGCTG-ACGGCG 1048
||.||.||.|||||.|||||..|||||||.|||||||| ||.| |.||.|
BL01439___ctp 997 GGATCGACCGTCAAGCTGACGATTGCCAAGTGGCTGAC-GCCGAATGGGG 1045
BSNT_03194___ 1049 AATGGATTCACAAAAAAGGCATCAAGCCTCAAGTGAAAGCTGAGCTGCCT 1098
|.|||||||||.|||||||.|||||.||||||...|||||.|||||.||.
BL01439___ctp 1046 ACTGGATTCACGAAAAAGGAATCAAACCTCAATATAAAGCGGAGCTCCCA 1095
BSNT_03194___ 1099 GATTACGCGAAGCTGCCGTATTTGGACGCAGATAAAACGTACAAATCAGG 1148
...||.||.||.||||||||..||||..|..|.|||..|||.||..||||
BL01439___ctp 1096 AGCTATGCCAAACTGCCGTACCTGGATTCCAAAAAAGAGTATAAGGCAGG 1145
BSNT_03194___ 1149 TGATACAGGCAC---AAAC---GTCAAAGTGGCTCAGAAAATGCTCAAAG 1192
|| |||| |.|| ||.||||..||.|||.|||||||..|||
BL01439___ctp 1146 -----CA-GCACCGGAGACGAAGTGAAAGCCGCCCAGCAAATGCTTCAAG 1189
BSNT_03194___ 1193 CACTTGGTTACAAGGTAAA--CGTTAACAGTA-CGTATGAC---CA---G 1233
|.||.||.||.|||.|.|| || ||.|.| |.|..||| || |
BL01439___ctp 1190 CGCTCGGCTATAAGCTGAATGCG---ACTGGAGCTTTCGACGCACAGACG 1236
BSNT_03194___ 1234 GATTTTGTATCTGTCGTCAAACAGTTCCAGAAA----AAAGAGGAGCTGA 1279
|| |.|||.|||.||....||.||.||| ||| ||||||
BL01439___ctp 1237 GA------AGCTGCCGTTAAGGCTTTTCAAAAAGACCAAA----AGCTGA 1276
BSNT_03194___ 1280 AAGAAACAGGCATACTGACTGGCGATACAACAACGAAATTAA---TGATA 1326
||...||||||||.||.||.|||||.||.|||| |.| |||.|
BL01439___ctp 1277 AAACGACAGGCATCCTAACGGGCGAGACGACAA------TCAGCCTGACA 1320
BSNT_03194___ 1327 ---GAACTTCAAAAGAAGCTGTCTGATAATGATACGCAAATGGAAAAGGC 1373
.|.||.||..|.|||||.||.||.|||||||||||..||||.||.||
BL01439___ctp 1321 AGCAAGCTGCAGGATAAGCTTTCCGACAATGATACGCAGTTGGATAAAGC 1370
BSNT_03194___ 1374 AATTGAAACACTGAAAAAAGAAATGTAA 1401
.|||||.|...|.||||||||.|..|||
BL01439___ctp 1371 GATTGAGATCTTAAAAAAAGAGAAATAA 1398
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