Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03205 and BL01435
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_03205___yodM.1.5803.seq
# -bsequence dna-align/BL01435___yodM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03205___yodM-BL01435___yodM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03205___yodM-BL01435___yodM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03205___yodM
# 2: BL01435___yodM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 756
# Identity: 390/756 (51.6%)
# Similarity: 390/756 (51.6%)
# Gaps: 249/756 (32.9%)
# Score: 911.5
#
#
#=======================================
BSNT_03205___ 1 ---------------------------------------TTGTA-CAAGC 10
.|||| .||||
BL01435___yod 1 ATGTTTAAAAACAATGTCAAGGAGGCACTGACTTTTCTAATGTATAAAGC 50
BSNT_03205___ 11 CCGTTAGTTTGTTTC-----TTTTCTTTCTCATTCTAGCTGCGGCCATTC 55
.| |..|||| .|.|||||.||||..| ||||||||
BL01435___yod 51 AC------TATTTTCAGCAGCTGTCTTTGTCATCAT------GGCCATTC 88
BSNT_03205___ 56 --ATACAAAT----GCTGTTCAATCTGCAGATGAAGCAATAAGC------ 93
||.|..|| ||.||||||||....|||| |.|||
BL01435___yod 89 TTATCCGCATCCCGGCGGTTCAATCATTTGATG------TGAGCGTGATA 132
BSNT_03205___ 94 AAGGCAGCTGTTTTGA-TCCGTCAGCCAT--------------GGCTTAA 128
.|||| |.|.|| ||.|||||.||| || ||..
BL01435___yod 133 CAGGC-----TCTCGAGTCTGTCAGACATCCGGTTCTCACAGCGG-TTTT 176
BSNT_03205___ 129 TGAAGTCATGAC------GGGGATCACGCATCTTGGTGCTTCTTCTTTTC 172
|.|||...|||| |||| |||.||..|||..||||.| |..|..
BL01435___yod 177 TAAAGCGCTGACAGAGCTGGGG-TCAAGCGGCTTCATGCTGC--CGCTGA 223
BSNT_03205___ 173 TGCTCCCTCTAA---TTGTCATCATTGGAGCAGGCATGTTTTTCTACAGA 219
||||..||.||| |.||..|| ||.| ||||.|.|
BL01435___yod 224 TGCTTGCTTTAACCCTGGTTCTC------GCCG---------TCTATAAA 258
BSNT_03205___ 220 AAAACATGGGACGGC----CTG---------TTGATGCTCTTAGTATTCG 256
|||.|| .|||| ||| |||.||.|.||.||
BL01435___yod 259 AAAGCA----GCGGCATCACTGTATCTTTATTTGCTGTTTTTTGT----- 299
BSNT_03205___ 257 GCACAGATCGGCTGTTAAACAAAGTCTTAAAAGAATGGATCGAAAGAGTG 306
..|.|||.|||| .||..|||.||||||||..|||||.|..||||.|
BL01435___yod 300 TGAAAGAACGGC----CAATGAAGCCTTAAAAGGCTGGATTGCCAGAGAG 345
BSNT_03205___ 307 AGGCC--TGATTTTGCA---CCGCTGGTTCATGAATCATCCTTCAGTTTT 351
.|||| .||| | |||||.||.||.|||.|.||.|.|||.|||
BL01435___yod 346 CGGCCCGCGAT-----AAACCCGCTCGTGCACGAACCGTCATACAGCTTT 390
BSNT_03205___ 352 CCGAGCGGCCATTCCATGAATGCTGCTTGTGTCTATCCTGTTATTGC--- 398
||||||||||||||.||||||||.||..|..|.|||||..||||.||
BL01435___yod 391 CCGAGCGGCCATTCGATGAATGCGGCGAGCATGTATCCGTTTATCGCATT 440
BSNT_03205___ 399 -CTACTTTTTAGTGAAACACCTC------CCGTTTTTGTCCAAGCATAAA 441
||.||||| .||| || |||||.|| |||
BL01435___yod 441 TCTCCTTTT----------GCTCTGCATTCC-TTTTTTTC-------AAA 472
BSNT_03205___ 442 AAAATGGTATATATCA-TAGC-CGGTGTAATTGCTG--------TTTTAG 481
||.| || |.|| ||||.||..|| || ||.|.|
BL01435___yod 473 AACA----------CAGTCGCGCGGTTTACGTG-TGGACGGGCCTTCTCG 511
BSNT_03205___ 482 TCGG---CAT---AAGCAG----AGTGTATCTGGGGGTTCATTTTGTGAC 521
|||| ||| ||.||| | |||||||.||.|||||||...||||
BL01435___yod 512 TCGGACTCATCGGAATCAGCCGCA-TGTATCTCGGCGTTCATTACATGAC 560
BSNT_03205___ 522 AGATGT--------GTTAGGCGGCTTTAGCCTCGG-CTTGCTTCTGTTTT 562
.||||| ||| |||.| ||||| ||.|| .|||||||
BL01435___yod 561 TGATGTTATCTCAGGTT-------TTTCG-CTCGGTCTCGC-GCTGTTTT 601
BSNT_03205___ 563 TCCT----AGTAAAAGGTTTTGACGAAAAGATTAAGCGGT--TTCGACAA 606
||.| |..|||| |||.||||||| ||..||.| ||||||||
BL01435___yod 602 TCATCTTCAAAAAAA----TTGGCGAAAAG--TACCCGCTTGTTCGACAA 645
BSNT_03205___ 607 AAATAG 612
||.|||
BL01435___yod 646 AAGTAG 651
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