Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03209 and BL01433
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_03209___yodN.1.5803.seq
# -bsequence dna-align/BL01433___yodN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03209___yodN-BL01433___yodN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03209___yodN-BL01433___yodN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03209___yodN
# 2: BL01433___yodN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 710
# Identity: 516/710 (72.7%)
# Similarity: 516/710 (72.7%)
# Gaps: 58/710 ( 8.2%)
# Score: 1884.0
#
#
#=======================================
BSNT_03209___ 1 ATGAAGCAAAATAAACCGAAATTCCAAGTAGGGGATATCGTAGTCGTCAT 50
||||||..|||....||.||||||.||||.||||||.|.||.||||||.|
BL01433___yod 1 ATGAAGTCAAACGCGCCTAAATTCAAAGTCGGGGATGTGGTCGTCGTCGT 50
BSNT_03209___ 51 TATGTATGGAACAGTCGGCACCATCACAAAAGTACACCAAATTGATAAAC 100
.|||||.||.||.|||||.||.||.||||||||.||..||||.|||||.|
BL01433___yod 51 GATGTACGGGACGGTCGGAACGATTACAAAAGTTCATAAAATCGATAAGC 100
BSNT_03209___ 101 ACTATCTTTATGAAGTCAATCATAACGAAGT--TTTATACTTTGAATCAT 148
|.|.|.|.|||||||||||||||||.||||| ||||| ||.||..|.|
BL01433___yod 101 ATTTTTTGTATGAAGTCAATCATAATGAAGTGCTTTAT--TTCGAGACTT 148
BSNT_03209___ 149 CTATTCAGCTTTATAAAGATTATGAGGGTGTCATTGTCGACATGGAGAAG 198
||.||||.|||||.|||||||||||.||.|||||||||||.|.|||.|||
BL01433___yod 149 CTCTTCAACTTTACAAAGATTATGACGGGGTCATTGTCGATACGGAAAAG 198
BSNT_03209___ 199 CTTGATATTGAGTATGAATTCCTTATTGGGGACGTTGTTTATGTAAAAGA 248
|||||.||.||.||||||||..|.||.||.||.||.||.|||||||||||
BL01433___yod 199 CTTGACATCGAATATGAATTTTTAATCGGAGATGTCGTCTATGTAAAAGA 248
BSNT_03209___ 249 TTATGGAAAAGAACTCTTTCGCATTATCGGCCATAGAACAGAAATTTGGA 298
|||.||.||||||.|.|||...||.|.|||.||.|||||.||||||||||
BL01433___yod 249 TTACGGCAAAGAATTGTTTAAAATCACCGGGCACAGAACGGAAATTTGGA 298
BSNT_03209___ 299 GATATTTAGAAGATGGCTGGGAAGATATCATTTATGAGCTGACCCGTTTA 348
|||||.|.||.|||||||||||||||||||||||.||||||||||||||.
BL01433___yod 299 GATATGTGGAGGATGGCTGGGAAGATATCATTTACGAGCTGACCCGTTTG 348
BSNT_03209___ 349 AAGGATGGAGAGTGGCTTGAAACGGAGGAAGAGGATCTCACGCTGGTGCT 398
||.||.|||||.|||||||||||.||.|||||.|||.|.|||||.|||||
BL01433___yod 349 AAAGACGGAGAATGGCTTGAAACTGAAGAAGAAGATTTAACGCTCGTGCT 398
BSNT_03209___ 399 TAGAAAATATGAAATGGACCAGTTTGTGCATCAGCTGTTGTTTGTCCATT 448
|||||..||.||||||||||||||.||.||||||||..|||||||.||||
BL01433___yod 399 TAGAACCTACGAAATGGACCAGTTCGTCCATCAGCTTCTGTTTGTTCATT 448
BSNT_03209___ 449 ATGTCGGAGAAACTGGCCATGAGATCGGCGAA--GATATCGCATCGTCTG 496
|||||||.|||.|.||.||.|||.|.|..||| |||| ||||
BL01433___yod 449 ATGTCGGCGAAGCCGGACAAGAGCTTGATGAACCGATA--------TCTG 490
BSNT_03209___ 497 -----CTCTTCTT--CAGTT-----TGAAGGCGATGATGAAGATCAAGAT 534
.|.||.|| ||.|| |||...|||.||..|.|||||.||
BL01433___yod 491 AAAAAGTGTTTTTGCCATTTTCTGGTGATTCCGAGGAGCAGGATCATGA- 539
BSNT_03209___ 535 ACCCTTCACATCCTTGC----TGTGTCAATT------GTTGATGAGCTTC 574
|| |.||.||.|| ||.|||||.||.|
BL01433___yod 540 ---------------GCGCAATATGGCAGTTACTGTCGTGGATGAACTGC 574
BSNT_03209___ 575 TGGATATTTATAATGACTACAAAATTCTGTACGAAATGTTTCATGATGAA 624
|.|||||.||.||||||||.|||.|..||||.|||||||||||.||||..
BL01433___yod 575 TTGATATCTACAATGACTATAAAGTATTGTATGAAATGTTTCAGGATGCG 624
BSNT_03209___ 625 GAATATAAAGACATGATGATGTTTGTTTTGGAA--AGTTTAAAAGAGCAT 672
|||||||||||.||||||..||||||.|| || ||..|.|||||..||
BL01433___yod 625 GAATATAAAGATATGATGGAGTTTGTGTT--AAGCAGCCTGAAAGAATAT 672
BSNT_03209___ 673 TTCAGTTAG- 681
||||..| |
BL01433___yod 673 TTCAAAT-GA 681
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