Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03215 and BL01430
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_03215___kamA.1.5803.seq
# -bsequence dna-align/BL01430___kamA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03215___kamA-BL01430___kamA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03215___kamA-BL01430___kamA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03215___kamA
# 2: BL01430___kamA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1456
# Identity: 1067/1456 (73.3%)
# Similarity: 1067/1456 (73.3%)
# Gaps: 86/1456 ( 5.9%)
# Score: 3785.5
#
#
#=======================================
BSNT_03215___ 1 TTGAAAAACAAATG----GTATAAACCGAAACGGCATTGGAAGGAGATCG 46
.||.||||| | ||.|||.||||||.||||.||||||||.||.|
BL01430___kam 1 ATGGAAAAC----GGTCTGTTTAAGCCGAAAAGGCACTGGAAGGATATTG 46
BSNT_03215___ 47 AGTTATGGAAGGACGTTCCGGAAGAGAAATGGAACGATTGGCTTTGGCAG 96
||.|.|||||.||.|||||.||.||.|||||||||||.|||.|.||||||
BL01430___kam 47 AGCTTTGGAAAGATGTTCCCGAGGAAAAATGGAACGACTGGATATGGCAG 96
BSNT_03215___ 97 CTGACACATACTGTAAGAACGTTAGATGATTTAAAGAAAGTCATCAATCT 146
|||||..|.||.||.||||||.|.||.|||||.||.||||||.|||||||
BL01430___kam 97 CTGACCAACACCGTCAGAACGCTTGAAGATTTGAAAAAAGTCGTCAATCT 146
BSNT_03215___ 147 GACTGAGGATGAAGAGGAAGGCGTCAGAATTTCTACTAAAACGATCCCCT 196
.||..|.||.|||||.|||||.||..||||.||.||.||.||||||||.|
BL01430___kam 147 TACGAAAGAGGAAGAAGAAGGGGTGCGAATCTCCACAAAGACGATCCCTT 196
BSNT_03215___ 197 TAAATATTACACCTTACTATGCTTCTTTAATGGACCCCGACAATCCGAGA 246
|||||||.||.||.||.||.||.||..|.|||.|.||.||..|||||.|.
BL01430___kam 197 TAAATATCACGCCGTATTACGCCTCACTGATGAATCCGGATGATCCGCGC 246
BSNT_03215___ 247 TGCCCGGTACGCATGCAGTCTGTGCCGCTTTCTGAAGAAATGCACAAAAC 296
||.|||.|..|.||||||||.||||||||..|.|||||||||||||||||
BL01430___kam 247 TGTCCGATCAGAATGCAGTCGGTGCCGCTCGCAGAAGAAATGCACAAAAC 296
BSNT_03215___ 297 AAAATACGATCTGGAAGACCCGCTTCATGAGGATGAAGATTCACCGGTAC 346
|||||||||.||.|||||.||.||||||||||||||||||||.||.||.|
BL01430___kam 297 AAAATACGACCTTGAAGATCCCCTTCATGAGGATGAAGATTCGCCTGTCC 346
BSNT_03215___ 347 CCGGTCTGACACACCGCTATCCCGACCGTGTGCTGTTTCTTGTCACGAAT 396
||||..|.||.|||||||||||.|||||.||..|||||||.|||||.|||
BL01430___kam 347 CCGGCTTAACCCACCGCTATCCGGACCGGGTTTTGTTTCTCGTCACTAAT 396
BSNT_03215___ 397 CAATGTTCTATGTACTGCCGCTACTGCACAAGAAGGCGCTTTTCCGGACA 446
|||||.||.|||||.|||.|.|||||.|||||..||||.||||||||.||
BL01430___kam 397 CAATGCTCGATGTATTGCAGATACTGTACAAGGCGGCGTTTTTCCGGGCA 446
BSNT_03215___ 447 AATCGGAATGGGCGTCCCAAAAAAACAGCTTGATGCTGCAATTGCTTATA 496
||||||.||||||||.||.|||||.|||||.|||...||.||.|..||||
BL01430___kam 447 AATCGGCATGGGCGTGCCGAAAAAGCAGCTCGATCAGGCGATCGGCTATA 496
BSNT_03215___ 497 TCCGGGAAACACCCGAAATCCGCGATTGT-TTAATTTCAGGCGGTGATGG 545
|.|||||.||.||.||..||.|.|| ||| .|.||.||||||||.||.||
BL01430___kam 497 TTCGGGATACGCCTGATGTCAGGGA-TGTGCTGATATCAGGCGGGGACGG 545
BSNT_03215___ 546 GCTGCTCATCAACGACCAAATTTTAGAATATATTTTAAAAGAGCTGCGCA 595
.||.|||||.||||||||.||..|.|||||||||||.|||.|.||.|||.
BL01430___kam 546 CCTCCTCATTAACGACCAGATCCTTGAATATATTTTGAAAAACCTCCGCG 595
BSNT_03215___ 596 GCATTCCGCATCTGGAAGTCATCAGAATCGGAACAAGAGCGCCCGTTGTC 645
.|||||||||..|||||.||||..|.|||||.|||||.||.||.||.|||
BL01430___kam 596 CCATTCCGCACGTGGAAATCATTCGGATCGGCACAAGGGCCCCAGTCGTC 645
BSNT_03215___ 646 TTTCCGCAGCGCATTACCGATCATCTGTGCGAG-ATATTGAAAAAATATC 694
||.||||||||.||||||||..|.||.||| || ||.||||||||.||||
BL01430___kam 646 TTCCCGCAGCGGATTACCGACAAGCTATGC-AGCATTTTGAAAAAGTATC 694
BSNT_03215___ 695 ATCCGGTCTGGCTGAATACCCATTTTAACACAAGCATCGAAATGACAGAA 744
||||.||||||||||||||.|||||.|||||.|||||.|||||.|| |||
BL01430___kam 695 ATCCCGTCTGGCTGAATACGCATTTCAACACGAGCATTGAAATCAC-GAA 743
BSNT_03215___ 745 -GAATCCGTTGAGGCATGTGAAAAGCTGGTGAACGCGGGAGTGCCGGTCG 793
|||.|....||.||.|||||.||||||||.||.||.||.||||||||||
BL01430___kam 744 GGAAGCGAAGGAAGCCTGTGAGAAGCTGGTCAATGCCGGGGTGCCGGTCG 793
BSNT_03215___ 794 GAAATCAGGCTGTCGTATTAGCAGGTATTAATGA-TTCGGTTCCAATTAT 842
|.|||||.||.||..|.||.|||||.|||||||| ..||.|||| |||||
BL01430___kam 794 GCAATCAAGCCGTTATTTTGGCAGGCATTAATGACAGCGTTTCC-ATTAT 842
BSNT_03215___ 843 GAAAAAGCTCATGCATGACTTGGTAAAAATCAGAGTCCGTCCTTATTATA 892
|||||||||.||||||||.|||||.|||||||||||||||||.|||||||
BL01430___kam 843 GAAAAAGCTGATGCATGATTTGGTGAAAATCAGAGTCCGTCCGTATTATA 892
BSNT_03215___ 893 TTTACCAATGTGATCTGTCAGAGGGAATCGGGCATTTCAGAGCTCCTGTT 942
||||.|||||.||..||||.||.||||||||.||||||.||||.|||||.
BL01430___kam 893 TTTATCAATGCGACTTGTCTGAAGGAATCGGCCATTTCCGAGCGCCTGTA 942
BSNT_03215___ 943 TCCAAAGGTTTGGAGATCATTGAAGGGCTGAGAGGCCATACCTCAGGCTA 992
||.||.||..|.||.|||||||||||..||.|.|||||.||....|||||
BL01430___kam 943 TCAAAGGGGCTTGAAATCATTGAAGGCTTGCGCGGCCACACGAGCGGCTA 992
BSNT_03215___ 993 TGCGGTTCCTACCTTTGTCGTTGACGCACCAGGCGGAGGAGGTAAAATCG 1042
|||.||.||.|||||||||||||||||.||.||||||||.||.|||||||
BL01430___kam 993 TGCAGTGCCGACCTTTGTCGTTGACGCGCCGGGCGGAGGCGGGAAAATCG 1042
BSNT_03215___ 1043 CCCTGCAGCCAAACTATGTCCTGTCACAAAGTCCTGACAAAGTGACCT-- 1090
||.|.|||||.||.||..|..|.||.|||||.||.||.||||| |.|
BL01430___kam 1043 CCATCCAGCCGAATTACTTGATTTCGCAAAGCCCCGATAAAGT--CGTGC 1090
BSNT_03215___ 1091 TAAGAAATTTTGAAGGTGTGATTACGTCATATCCGGAACCAGAGAATTAT 1140
|..|.|||||||||||.||.||||||||.|||||.||.||.||.||.|||
BL01430___kam 1091 TCCGCAATTTTGAAGGCGTCATTACGTCGTATCCTGAGCCTGAAAACTAT 1140
BSNT_03215___ 1141 ATCCCCAATCAG------GCAGACGCCTATTTTGAGTCCG---TTTTCCC 1181
.| ||.| ||.||||.|||||||| ||| |.|||||
BL01430___kam 1141 GT------TCCGGGGAGAGCGGACGACTATTTTG---CCGAAATCTTCCC 1181
BSNT_03215___ 1182 TGA-------AACCGCTGACAAAAAGGAGCCGATCGGGCTGAGTGCCATT 1224
||| || .||.|||.|||| ||||||..|....||.||.
BL01430___kam 1182 TGATGTGATGAA----GGAAAAAGAGGA---GATCGGCATATCGGCAATC 1224
BSNT_03215___ 1225 TTTGCTGACAAAGAAGTTTCGTTTACAC-------CTGAAAATG--TAGA 1265
|.|||.||..|||...||||.|..|||| ||.||||.| |.||
BL01430___kam 1225 TATGCGGATCAAGCTCTTTCATACACACCGGACGGCTTAAAACGGCTCGA 1274
BSNT_03215___ 1266 CAGAATCAAAAGGAGAGAGGCATACATCGCA--AATCCGGAGCATGAAAC 1313
.|||| ||||.||..||.| || |..||.||.||||||||
BL01430___kam 1275 GAGAA-------GAGAAAGCTATTC----CAAGAGGCCTGATCATGAAAC 1313
BSNT_03215___ 1314 ATT-AAAAGATCGGCGTGAGAAAAGGGATCAGCTCAAAGAAAAGAAATTT 1362
||| ||||| .||.||.|..||..|.|||.|..|.||||||||||||||.
BL01430___kam 1314 ATTGAAAAG-CCGCCGGGCAAAGCGCGATGAATTGAAAGAAAAGAAATTC 1362
BSNT_03215___ 1363 TTGGCGCAGCAGAAAAAACAGAAAG-AGACTGAATGCGGAGGGG-ATTCT 1410
.|.||.|||| ||.|||||| ||.| ||| ||.|||||| ||.|.
BL01430___kam 1363 CTTGCCCAGC------AAAAGAAAGAAGGC-GAA-GCTGAGGGGCATGCG 1404
BSNT_03215___ 1411 TCATGA 1416
..||||
BL01430___kam 1405 CAATGA 1410
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