Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03219 and BL01428
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_03219___yodQ.1.5803.seq
# -bsequence dna-align/BL01428___yodQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03219___yodQ-BL01428___yodQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03219___yodQ-BL01428___yodQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03219___yodQ
# 2: BL01428___yodQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1343
# Identity: 926/1343 (69.0%)
# Similarity: 926/1343 (69.0%)
# Gaps: 112/1343 ( 8.3%)
# Score: 3019.5
#
#
#=======================================
BSNT_03219___ 1 ATGCAAGACATTGAAAGAAAAGTAATCGAGTGGCTTGATCAGCATTCGGC 50
|||.|..||||.||.||||||||...|||.|||.|.|||..||||..|..
BL01428___yod 1 ATGGAGAACATAGAGAGAAAAGTGTGCGATTGGATCGATTCGCATGAGCA 50
BSNT_03219___ 51 CAAAGCCATTCGTCTTCTCAAAAGGCTCATTGGGGAAAAAAGCACATTGG 100
.|||||.|||||.|||.|.||||..|||.|.||.|||||||||||..|||
BL01428___yod 51 AAAAGCGATTCGCCTTTTGAAAAAACTCGTCGGAGAAAAAAGCACGATGG 100
BSNT_03219___ 101 GGTCAGAGTTTAACGCCCAAGCTGTTGTGCTTGAAAAGCTGCGGCAATTT 150
|...|||.|||||||||||.||.||.||.||.||.||..||.|||||||.
BL01428___yod 101 GCCGAGAATTTAACGCCCAGGCCGTCGTCCTGGAGAAATTGAGGCAATTC 150
BSNT_03219___ 151 CATATGGACATTGATGTATGGGAGCCAAGCATAAAGCAATTAAAACAGCA 200
.|....||.||.|||||.||||||||||||||||||||.||..|||||||
BL01428___yod 151 GAAGCTGAAATCGATGTCTGGGAGCCAAGCATAAAGCAGTTGGAACAGCA 200
BSNT_03219___ 201 TCC-CTACTTTAAATCTAACCGATCCGATTTTCATGAGAGCCCGAATATC 249
||| || .||||||||..||.||.|....|||.|.||.|||||||||||.
BL01428___yod 201 TCCGCT-GTTTAAATCAGACAGAACAAGCTTTAAAGAAAGCCCGAATATT 249
BSNT_03219___ 250 GTGGC---TAAAAAAACGGGAGCCGGCGAAGGTAGGTCCCTGATTTTGAA 296
|.||| ||||||| |||...||||..||.|..||.|||||.||.||
BL01428___yod 250 GCGGCTGTTAAAAAA---GGAAAGGGCGGCGGGAAATCGCTGATCTTAAA 296
BSNT_03219___ 297 CGGCCATATCGATGTTGTGCCTGAAGGAAGCGTAAAGGATTGGAAGTATG 346
|||.||.||||||||.|||||||||||||.|..|||.||.|||.||...|
BL01428___yod 297 CGGACACATCGATGTCGTGCCTGAAGGAAACAGAAAAGACTGGGAGACGG 346
BSNT_03219___ 347 AACCGTATCAAGC----TGTCGAAGAA--AACGGTAAAATATACGGCCGC 390
|.||.|.|| ||| ||| ||||.| ..||| |||||||||||.
BL01428___yod 347 AGCCTTTTC-AGCCGGTTGT-GAAGCAGGGGCGG----ATATACGGCCGA 390
BSNT_03219___ 391 GGTTCAACGGATATGAAGGGAGGCAATACAGCCCTTCTTTTTGCTTTAGA 440
||..||||.||.|||||.||.||||||||.||.|||.|..|.||..|.||
BL01428___yod 391 GGCACAACTGACATGAAAGGCGGCAATACCGCTCTTTTAATCGCGATGGA 440
BSNT_03219___ 441 AGCCCTGCACGC-CTGCGATGTCAAACTGAAGGGAGA--TGTATTGTTTC 487
|||.|||.| || .||||..||..||||.||.||||| | |||| ||||
BL01428___yod 441 AGCGCTGGA-GCAATGCGGGGTTCAACTAAAAGGAGACCT-TATT-TTTC 487
BSNT_03219___ 488 AGAGTGTTGTAGATGAAGAGTGCGGCGGCGCCGGTACACTGTCCGCCATC 537
|.|||||.|||||.||.|||||.|||||.|||||.||.||..|.|||.|.
BL01428___yod 488 AAAGTGTCGTAGACGAGGAGTGTGGCGGAGCCGGGACGCTTGCGGCCGTA 537
BSNT_03219___ 538 ATGAGAGGCTATCGTGCTGACGGGGCACTGATTCCTGAACCGACGAATAT 587
|||||.|||||....||.|||||.||..|||||||.||.|||||.|||||
BL01428___yod 538 ATGAGGGGCTACAAAGCGGACGGCGCTTTGATTCCCGAGCCGACAAATAT 587
BSNT_03219___ 588 GAAACTATTTATTAAGCAGCAGGGTTCGATGTGGTTTCGGATCACTGT-G 636
||||.|.||||||||.||||||||.||.||||||||..|.|||||.|| .
BL01428___yod 588 GAAAATGTTTATTAAACAGCAGGGCTCAATGTGGTTCAGAATCACGGTCA 637
BSNT_03219___ 637 AAGGGATTATCCGCACATGGGGGCACACGCTATGAAGGGGTAAGCGCGAT 686
|||||.|| ||.||.||.||.||||||.|.||||||||.||.|||||.||
BL01428___yod 638 AAGGGCTT-TCTGCGCACGGCGGCACAAGATATGAAGGCGTCAGCGCCAT 686
BSNT_03219___ 687 TGAAAAAAGCATGCACGTTA-TCACAGCGTTACAAGAGCTGGAGAAAGTC 735
.|||||||||||||..||.| ||| |.||.|.|...||||.||..|.|||
BL01428___yod 687 CGAAAAAAGCATGCTTGTCATTCA-ATCGCTCCGCCAGCTTGAACAGGTC 735
BSNT_03219___ 736 CGCAATGCGAGAATTTCAGATCCGCTGTATGACAATATCCCAATACCGGT 785
.|.|||..||||||..|||||.|..||||||||||||||||.||.|||||
BL01428___yod 736 AGGAATAAGAGAATAACAGATTCTTTGTATGACAATATCCCGATTCCGGT 785
BSNT_03219___ 786 ACCGGTGAATATCGGCACCATCTCAGGCGGTGCCTGGCCATCTTCAGTTG 835
.|||.|.||.||||||||.|||...||.||.||||||||.||.||.||||
BL01428___yod 786 CCCGATCAACATCGGCACGATCAACGGAGGCGCCTGGCCTTCGTCGGTTG 835
BSNT_03219___ 836 CAGAC-CGTGTCGTCA-TAGAAGGGAGATGCGGAATTGCTCCCCATGAGA 883
|.||| || || |.|| |.|||||.||.||||||||.||||| ||
BL01428___yod 836 CCGACACG-GT-GACACTGGAAGGAAGGTGCGGAATCGCTCC------GA 877
BSNT_03219___ 884 A--AA----CAGAAGCTGTAAAACTTGAATTGGAAAACTGGCTGAAGGAT 927
| || |.|||||.||..|....||..|.|||||||||||.||.|||
BL01428___yod 878 ACGAATCCCCTGAAGCCGTCCAGTCCGAGCTTGAAAACTGGCTCAACGAT 927
BSNT_03219___ 928 TTAGAATACCATGACGAATGGTTTAAACGCCATCCCGTACAAGTCGAATG 977
.|..|.||||||||.|||||||||||.|.|.||||.||..|..|.|||||
BL01428___yod 928 CTTCAGTACCATGATGAATGGTTTAAGCACTATCCTGTTGATATAGAATG 977
BSNT_03219___ 978 GTTTGGCGCTCA-ATGGCTGCCGAATGATTTACCTGATGATCATCCTTTA 1026
|||.||||| || .|||||.||.||.|||||..||||.|| ||.|.|
BL01428___yod 978 GTTCGGCGC-CATGTGGCTTCCTAACGATTTGGCTGAAGA----CCATGA 1022
BSNT_03219___ 1027 ATTTCT-------GTGCTGCAATCAGCCTATCAAAAAATGAAACA-GACA 1068
| || ||||||.||||.||||||||||..|| || |.||
BL01428___yod 1023 A---CTGACGAAAGTGCTGAAATCCGCCTATCAAACCAT----CACGGCA 1065
BSNT_03219___ 1069 GAG---CCGATTATTGAGGCTTCCCCGTGGGGAACGGATGGAGGGCTTTT 1115
||| |||.|.||.||.|||||||||||||..||.||.||.||..|.||
BL01428___yod 1066 GAGGCTCCGCTCATCGAAGCTTCCCCGTGGGCGACAGACGGCGGAATATT 1115
BSNT_03219___ 1116 GTACCATGCAGGAGATACACCAGTAATCGTTTTCGGGCCGGGGGAAACAA 1165
||..||.||.||||..||.||.||.|||||.|||||||||||.|||||.|
BL01428___yod 1116 GTCGCACGCCGGAGGCACCCCTGTCATCGTCTTCGGGCCGGGAGAAACGA 1165
BSNT_03219___ 1166 AAACGGCTCATCAGGCCAATGAATACATTGAGGTTGAAGCCATGATAGAA 1215
|||.|||.||.|||||.||.|||||||||||....||.|||.||||..|.
BL01428___yod 1166 AAATGGCCCACCAGGCAAACGAATACATTGAAAAAGACGCCCTGATCCAG 1215
BSNT_03219___ 1216 TCTGCTAAAATTATTGCA--CTTTTTGTCATGGATTGGTGCGGGCTTCAT 1263
||.||.||.||.|| || ||.|||.|.|||.|||||||.| .|.||
BL01428___yod 1216 TCAGCCAAGATCAT--CAGCCTGTTTATTATGAATTGGTGTG---ATTAT 1260
BSNT_03219___ 1264 -ACAGATGGGGAGGATGCGGATGCTCAAGTCAATAAAGAGTAG 1305
|.||.||.
BL01428___yod 1261 GAAAGGTGA---------------------------------- 1269
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