Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03220 and BL01427
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_03220___yodR.1.5803.seq
# -bsequence dna-align/BL01427___yodR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03220___yodR-BL01427___yodR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03220___yodR-BL01427___yodR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03220___yodR
# 2: BL01427___yodR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 687
# Identity: 464/687 (67.5%)
# Similarity: 464/687 (67.5%)
# Gaps: 66/687 ( 9.6%)
# Score: 1507.0
#
#
#=======================================
BSNT_03220___ 1 ATGGGCTTGGGAGT-----AGCAGAAAGAGAACAGATTGCAAAACGCGCT 45
|||||.|||||||| ||| |..||||| ||.||.|||||.||.
BL01427___yod 1 ATGGGTTTGGGAGTCATAGAGC-GGGAGAGA----ATCGCGAAACGGGCG 45
BSNT_03220___ 46 GCTACTGAAAT--TAAGCAGGGCATGATTGTGAATCTCGGTATCGGTATC 93
||....||||| .|||| ||.||||||||.|||||.||.||.||.||.
BL01427___yod 46 GCCCGCGAAATCAAAAGC--GGAATGATTGTCAATCTGGGCATTGGCATT 93
BSNT_03220___ 94 CCATCCTTGGTACCGAACTTTTTGAAGCCTG--ACATGCAGGTCATGTTT 141
||.||.||.||.||.||||||||..|.||.| ||.|.| ||.|||.|.
BL01427___yod 94 CCGTCTTTAGTTCCCAACTTTTTAGACCCGGGCACTTCC--GTAATGATC 141
BSNT_03220___ 142 CAAGCGGAAAACGGTGTCCTTGGCATTGGAGAAAGTCCCGAAAAGGGAGA 191
|||.|.||||||||..|.||.|||||.||.|.|...||.|||||.|||.|
BL01427___yod 142 CAATCTGAAAACGGGCTTCTCGGCATCGGCGGATCGCCTGAAAAAGGAAA 191
BSNT_03220___ 192 AGAGGATGCGCATTTATGCAACGCCGCGGGATATCCTGTCCGCGCTGTAA 241
.||.||||.|.||.|.|||||.||.||.||.|..||||||..||..||||
BL01427___yod 192 GGAAGATGAGAATCTTTGCAATGCGGCAGGCTGGCCTGTCACCGTAGTAA 241
BSNT_03220___ 242 AAGGGGCGTCTTATTTTGATACAACCATGTCTTTTGCAATGATCAGAAAA 291
||||.||.||||||||||||.||.|..||||.||.|..|||||||||||.
BL01427___yod 242 AAGGCGCTTCTTATTTTGATTCAGCTCTGTCGTTCGGCATGATCAGAAAG 291
BSNT_03220___ 292 GGCAAAATTGACATTACGATTTTAGGCGCCCTGCAGGTGAGCCAATCAGG 341
||....|||||..|.||.|||.|.||..|.||||||||.|||||.|||||
BL01427___yod 292 GGTGCGATTGATGTCACCATTCTTGGTTCTCTGCAGGTCAGCCAGTCAGG 341
BSNT_03220___ 342 AGATTTGGCAAATTGGCTTGTTCCGGGAAAAAAGGTGCCTGGTATGGGCG 391
||||.||||.||.|||.|.||.||.||.||||||||.|||||.|||||.|
BL01427___yod 342 AGATCTGGCCAACTGGATCGTCCCAGGCAAAAAGGTTCCTGGAATGGGAG 391
BSNT_03220___ 392 GGGCGATGGAGCTTGCCCAAAAAGCGAAAAAAGTGGTTGTCGTCATGAGT 441
||||||||||||||||||||||.|||||||||||..|||||||.|||||.
BL01427___yod 392 GGGCGATGGAGCTTGCCCAAAAGGCGAAAAAAGTCATTGTCGTGATGAGC 441
BSNT_03220___ 442 CATACAGATCAAAAGGGAAGGCCTAAA-------TTAACAGAAAGATGTA 484
|||||.|||.||||.||....||.||| .|.|| ||||
BL01427___yod 442 CATACCGATAAAAACGGTGCACCCAAACTTGTCGCTGAC-------TGTA 484
BSNT_03220___ 485 CGCTGCCATTAACTGCTGCAGGCTGTGTAGATTTGATTATTACCGAAAAA 534
|.|||||..|.||.||...||||||.||.||..||.|.|||||.||||||
BL01427___yod 485 CTCTGCCGCTGACAGCAAAAGGCTGCGTCGACATGGTAATTACAGAAAAA 534
BSNT_03220___ 535 GCGGTTCTTGAGGTCGATAGCCAT---CA-------CTTCATTTTAAAAG 574
||.|| |||..|||| || .||..|.|||.|||
BL01427___yod 535 GCCGT----------GATCACCATTGACAGCGGCGGTTTTGTATTACAAG 574
BSNT_03220___ 575 AGCTGATGAAT-----GGCTCGACAATCGATGAGGTGACGAGGCTGACAG 619
||||||||||| ||.|| |.|||||.|||..|.|||||||.|
BL01427___yod 575 AGCTGATGAATGAAGAGGATC-----TTGATGATGTGCTGCGGCTGACGG 619
BSNT_03220___ 620 AAGCTGAA--ATCAAAATAGATATGCCTTTTTCTTAA 654
|.| ||| |||...||.||...|||..||||.|||
BL01427___yod 620 AGG--GAAAGATCCGGATCGACGGGCCGCTTTCGTAA 654
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