Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03222 and BL01425
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_03222___yodT.1.5803.seq
# -bsequence dna-align/BL01425___yodT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03222___yodT-BL01425___yodT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03222___yodT-BL01425___yodT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03222___yodT
# 2: BL01425___yodT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1431
# Identity: 933/1431 (65.2%)
# Similarity: 933/1431 (65.2%)
# Gaps: 186/1431 (13.0%)
# Score: 2865.5
#
#
#=======================================
BSNT_03222___ 1 ATGAGCAGTTATTTGATTAAGCCAGAGCTTAGCTCGGC---CTATCCGGT 47
|| |..||| ||||||||||||.||.|| ||.| || |||||||||
BL01425___yod 1 AT--GTCGTT-TTTGATTAAGCCGGATCT--GCAC-GCAAGCTATCCGGT 44
BSNT_03222___ 48 TG-TCAGTTATGCGAAGGG----TTCATATGTTTATGATCAGACCGGAAA 92
.| |||| |||||.||.|| |..|| ||| .||.||..|||||||
BL01425___yod 45 CGTTCAG-TATGCAAAAGGAAGCTGGAT-TGT---CGACCATTCCGGAAA 89
BSNT_03222___ 93 AAAATATCTCGACGGCTCGTCAGGTGCGGTGACATGTAATATCGGCCACG 142
....||.||.|||||.|..||.||.||.||.||.||.|||.||||.||||
BL01425___yod 90 GCGTTACCTTGACGGTTGTTCGGGGGCTGTTACCTGCAATCTCGGGCACG 139
BSNT_03222___ 143 GAGTTCGTGATGTGACTGAGAAGCTGAAAGAACAGCTTGATCAGGTGTCT 192
|.||.|..||.||||.||||...||.|||||.|||||||||...||.||.
BL01425___yod 140 GTGTCCAAGAAGTGATTGAGCCTCTCAAAGAGCAGCTTGATGCTGTTTCA 189
BSNT_03222___ 193 TTTGCTTACCGCTCACAGTTTACGAGTGAGCCCGCCGAGCAATTAGCCGC 242
||.|..|||||.||.||||||||.||||||||.|||||.||..|.||||.
BL01425___yod 190 TTCGTCTACCGTTCGCAGTTTACAAGTGAGCCGGCCGAACAGCTTGCCGA 239
BSNT_03222___ 243 TCTCTTGGCACAGGAGCTGCCCGGAGATGTGAATTGGTCTTTTTTTGTCA 292
.|||.||||..|...||||||.||.|||.|||||||||||||.|||||||
BL01425___yod 240 ACTCCTGGCTGAATGGCTGCCGGGTGATCTGAATTGGTCTTTCTTTGTCA 289
BSNT_03222___ 293 ACAGCGGGTCAGAAGCGATAGAAACAGCTATGAAAATCGCCATTCAGTAT 342
|||||||.||.|||||..|.|||||.||.||||||||||||.||||.||.
BL01425___yod 290 ACAGCGGATCGGAAGCAGTTGAAACCGCCATGAAAATCGCCGTTCAATAC 339
BSNT_03222___ 343 TGGCAGGAAAAAAAGCAAA--CACAAAAATCCATCTTTTTGTCTCGATGG 390
||||||||||||...|||| .|||||| |.||.||..|.||..|||||
BL01425___yod 340 TGGCAGGAAAAAGGACAAAACGACAAAA--CGATTTTCCTTTCAAGATGG 387
BSNT_03222___ 391 AGCAGTTACCACGGAATAACTTTGGGAGCGCTTTCATTGTCTGGTTTTTA 440
|.|||.||.||||||||.||....|||||.||.||..||||.||.|||||
BL01425___yod 388 AACAGCTATCACGGAATTACAAATGGAGCCCTGTCGCTGTCGGGATTTTA 437
BSNT_03222___ 441 TGAAAGGAGATACCGGTTCACCCATCTCATTGAGC---GGTATCCAGCTA 487
|||..|..|.|||.||||.||.|| |||...|| .||||||.||..
BL01425___yod 438 TGAGCGCCGCTACAGGTTTACGCA---CATGCTGCACAAGTATCCCGCCG 484
BSNT_03222___ 488 TCTCAGCTCCACATATTTATCGGCTGAATTATGAGACGGAAGAAGACTTT 537
..|||||.||| |.|.||| ||.||.|..|.||||
BL01425___yod 485 CTTCAGCGCCA-------AACTGCT----------ACAGATGCCGGCTTT 517
BSNT_03222___ 538 GTTCA----GACTGC-----AGC-----TG-ATGAACTGGACACTATGAT 572
.||| ||.||| ||| || |.|||.|.|| |.|
BL01425___yod 518 -CTCATCCTGAATGCCAGGAAGCGTGCGTGAAAGAAATCGA------GCT 560
BSNT_03222___ 573 C------AAAAGAATCGGAAGCCAATTCATCGCCGGCTTTGTGGCTGAGC 616
| |||||.|||||||..|||||||||||.|||||.||.||.||.|
BL01425___yod 561 CGCCGTTAAAAGGATCGGAAAGCAATTCATCGCGGGCTTCGTTGCCGAAC 610
BSNT_03222___ 617 CTATTATTGGTGCTGCAGGAGCAGCGATTACTCCGCCTCCGGGATATTAT 666
|..|||||||.|||||.||||||||.|||||..|.|||.|.||.||||||
BL01425___yod 611 CCGTTATTGGGGCTGCTGGAGCAGCTATTACGGCACCTGCTGGCTATTAT 660
BSNT_03222___ 667 GAGAGATTAAGTGAGGTATGCCGCACACACGATG---TGCTTTTTATTGC 713
.|.|.|.|||..||..|||| ||.|.|.| ||| |.||.|||||.||
BL01425___yod 661 AAAAAAGTAAAAGAAATATG-CGAAGATA--ATGAAATTCTCTTTATCGC 707
BSNT_03222___ 714 AGATGAAGTGATGACGGGGCTTGGGAGAACAGGAAGGATGCTCGCGACAG 763
.||||||||.||||..|||.|.||..||||.||..|||||||.||||..|
BL01425___yod 708 GGATGAAGTCATGAGCGGGATCGGCCGAACCGGCCGGATGCTGGCGATTG 757
BSNT_03222___ 764 AGCATTGG-----GACACCGTACCTGATATTGCTGTACTGGGGAAGGGAC 808
|.|||||| |||.||| ||||||||.|||||.||.|||||.|
BL01425___yod 758 AACATTGGGGTGTGACTCCG-----GATATTGCCGTACTCGGCAAGGGGC 802
BSNT_03222___ 809 TCGGTGCGGGGTATGCACCTATTGCCGCTGCCGTCGTATCTGATTCTATT 858
|..|.||.||.|||.||||.||||||||.||.|||.|.||.||....||.
BL01425___yod 803 TGAGCGCAGGCTATTCACCGATTGCCGCAGCGGTCATGTCCGACGGCATG 852
BSNT_03222___ 859 ATTGAAACGATAAAACAAGGGTCAGGTGTGATTATGAGCGGTCACACATA 908
||.||||||.|.|||.|.||.|||||.|..||.||||||||.||.||.||
BL01425___yod 853 ATGGAAACGGTCAAAAACGGCTCAGGGGCCATCATGAGCGGGCATACGTA 902
BSNT_03222___ 909 TAGTGCACATCCCTATTCAGCCAAAGCTGCTCTTGAAGTTTTGCGATATG 958
.||.|||.|.||||.|||||||...|||||.||.|..|||.|.||.||..
BL01425___yod 903 CAGCGCAAACCCCTTTTCAGCCCGTGCTGCGCTCGCCGTTCTCCGCTACA 952
BSNT_03222___ 959 TGTTAAAGCACG-GCTTGATCAAACAATC--AGAAAAAAAGGG---CGCT 1002
|..|.||||||| .|||| ||||||||.| |||.||||.||| .|||
BL01425___yod 953 TCCTGAAGCACGATCTTG-TCAAACAAGCCGAGATAAAAGGGGAAAAGCT 1001
BSNT_03222___ 1003 G-------TGCTGAAGAAAAAGCTTGATGAGGCGGCATCTCAAAGCGGCA 1045
| |||||| ||.||| |.||||..|.| ||.| |||
BL01425___yod 1002 GAAAAGAATGCTGA--AAGAAG--TTATGAAACAG----TCGA----GCA 1039
BSNT_03222___ 1046 TTATAGGTGATGTGCGCGGAAAAGGACTGCTATTAGGCATTGAATTTGTG 1095
||||.||.||.||..|.||.||.|||||.||..|.||.|||||||||||.
BL01425___yod 1040 TTATTGGCGACGTTAGGGGCAAGGGACTTCTTCTCGGGATTGAATTTGTC 1089
BSNT_03222___ 1096 GCAGACCAAAAAACGAAGAAAG-TGTTTCC---------GCCAGAGCAGG 1135
||.||.||||||| |.|.|||| ..||||| |||.|.|..||
BL01425___yod 1090 GCCGATCAAAAAA-GCAAAAAGACATTTCCTTCTTCAATGCCGGTGTCGG 1138
BSNT_03222___ 1136 CGGTAACCCAGCTTATTGTCA---GCGAGGCGAAAAAACGCGGGCTGATT 1182
| |.|.|||| .|||.|||||||||.|.||.|||.||
BL01425___yod 1139 C------------TCTCGTCATTTCCGAAGCGAAAAAAAGAGGACTGCTT 1176
BSNT_03222___ 1183 GTTTATCCTTCCAAAGCTGGAATAGACAGTGGAGAAGGAGATGCTGTCAT 1232
.|||||||.|||.|.||.||.||.|||.|.||.|..||||||||.|||||
BL01425___yod 1177 CTTTATCCGTCCCAGGCGGGTATTGACGGCGGCGGGGGAGATGCGGTCAT 1226
BSNT_03222___ 1233 TATTGCTCCTCCTTTTACCATTTCAGACGTTGAAATGGAAGAGCTTATCT 1282
.|||||.||.|||.||||.||.||.|||...||||||||||||||.||..
BL01425___yod 1227 CATTGCGCCGCCTCTTACGATATCGGACAAAGAAATGGAAGAGCTCATTG 1276
BSNT_03222___ 1283 CTATTTTTTCAGAAACAGTTGCAGCGGTCGAA----------AAAAACTT 1322
..||.||| ||||| ||| ||.| ||||||
BL01425___yod 1277 AAATATTT----AAACA--TGC------CGTATATGAGATTGAAAAAC-- 1312
BSNT_03222___ 1323 AA----AAAAGGATTGA-------------- 1335
|| |||||| |||
BL01425___yod 1313 AAGCGGAAAAGG--TGATGCGCGAAAGATGA 1341
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