Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04500 and BL01416
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:42
# Commandline: needle
# -asequence dna-align/BSNT_04500___glgA.1.5803.seq
# -bsequence dna-align/BL01416___glgA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04500___glgA-BL01416___glgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04500___glgA-BL01416___glgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04500___glgA
# 2: BL01416___glgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1565
# Identity: 1035/1565 (66.1%)
# Similarity: 1035/1565 (66.1%)
# Gaps: 220/1565 (14.1%)
# Score: 3112.5
#
#
#=======================================
BSNT_04500___ 1 TTGAAGATATTACTTGCTGTGTCAGAATGCACCCCATTTGTTAAATCAGG 50
|||||..|.|||.|||||||.||.|||||....||.||||||||||||||
BL01416___glg 1 TTGAAAGTCTTATTTGCTGTTTCTGAATGTGTGCCGTTTGTTAAATCAGG 50
BSNT_04500___ 51 AGGTCTTGCCGATGTAGCAGGCGCTCTGCCAAAGGCACTTGCGCGATTAG 100
.||.||.||||||||.||.||.||.||.||.||.|..||.||.|..||||
BL01416___glg 51 CGGGCTCGCCGATGTCGCCGGGGCGCTCCCGAAAGAGCTCGCCCTTTTAG 100
BSNT_04500___ 101 GCAATGCAGTAG-------CTGTGATGCTGCCGAAGTACAGCCAAATACC 143
||| ||| | ||.|||.|||||||.|||||....||..|
BL01416___glg 101 GCA------TAGAAACGGTC-GTCATGATGCCGAAATACAGTTTGATTGC 143
BSNT_04500___ 144 TGAA-CCGTGGAAAAAG-CGTATGAAAAAAAAGGCTGAGTG-TACGGTAG 190
.||| .||| .|.||| ||.|||...||||.||||||.|| .|.|.|.|
BL01416___glg 144 GGAAGACGT--CAGAAGACGGATGGTTAAAACGGCTGAATGCGAGGTTCG 191
BSNT_04500___ 191 CTGTCGGCTGGCGTCA-GCAATATTGCGGAATTGAACATATGGCC--GAA 237
| |||||.||||| || |||.|.||||||.|||||||| || |||
BL01416___glg 192 C-GTCGGGTGGCG-CAGGCAGTTTTGCGGCATTGAACA-----CCTTGAA 234
BSNT_04500___ 238 GACGATGTGA-------ATTA-TTACTTCATCGACAATGAGTACTATTTC 279
.|.||.| || |||| ||.|||.||| |||.|||.|||||.
BL01416___glg 235 CATGACG-GAGTTTCCTATTATTTTCTTGATC----ATGGGTATTATTTT 279
BSNT_04500___ 280 AACAGGGATTCGTTGTACGGGCATTATGATGACGGTGAGCGGTTTGCCTA 329
||..|||||||..|.|||||.|||||||||||.||.|||||||||||.|.
BL01416___glg 280 AATCGGGATTCCCTTTACGGCCATTATGATGATGGAGAGCGGTTTGCTTT 329
BSNT_04500___ 330 TTTTTCAAGAGCTGTGCTGGAGGC--------TGCCAAAGTTGTGAATGT 371
|||.||..|.|||||..||||.|| .|| |||||.|
BL01416___glg 330 TTTCTCGCGGGCTGTTTTGGAAGCACTATACGCGC--------TGAATTT 371
BSNT_04500___ 372 TCCAGCCGATATTGTTCATACTCACGATTGGCATACAGCGATGGTCAATT 421
|..|||.|||.|..|.|||||.|||||||||||.||||.|||||||||||
BL01416___glg 372 TGAAGCTGATGTCATCCATACCCACGATTGGCACACAGGGATGGTCAATT 421
BSNT_04500___ 422 ATTTGCTGAAAGAGGAGTACAGAAAACATCCTTTTTATGAACGGATGAAA 471
||||..|.|||||.||.||..|||||.|.||.||.|||.|.|..||||||
BL01416___glg 422 ATTTATTAAAAGAAGAATATCGAAAAAAGCCGTTCTATCAGCACATGAAA 471
BSNT_04500___ 472 AGCGTGCTCACGATCCACAACCTGCAGTTTCAAGGCATATTCCCTCCTGA 521
|||||..|.||.||.||.|||||.||.|||||.|||||.||||| ||
BL01416___glg 472 AGCGTATTTACAATTCATAACCTTCAATTTCAGGGCATTTTCCC----GA 517
BSNT_04500___ 522 TG--------TCACACATGACTTGCTGGGTCTTGAGATGGATCATTTTCA 563
.| | ||||||.||||.||.|||||.||....|| |||||
BL01416___glg 518 AGGAAGCGGTT----CATGACCTGCTCGGACTTGATATTTCCCA-TTTCA 562
BSNT_04500___ 564 TTA-TGAAAGGTTAGAATGCAATAGTTTT--------GTTAATTTTATG- 603
..| .||||.|.|.| |||||| .||||||.||||
BL01416___glg 563 CGACCGAAAAGCTCG--------AGTTTTATGGGAACATTAATTATATGA 604
BSNT_04500___ 604 AAGGCGGGCATCATTGCGGCTGATCATGTGACGACTGTGAGCCCCACTTA 653
||||| |||||.||.||.||||||||.|||||.||.||.||.||.||.||
BL01416___glg 605 AAGGC-GGCATTATCGCCGCTGATCAGGTGACAACGGTCAGTCCGACGTA 653
BSNT_04500___ 654 CAGAAATGAAATCTTGACGCCGTATTATGGTGAGCAGCTGGAGCAGGTTT 703
|.|..|||||||||||||.||.||.||.||.||||.|||.||...|||..
BL01416___glg 654 CCGCGATGAAATCTTGACTCCATACTACGGCGAGCGGCTTGAAGGGGTGC 703
BSNT_04500___ 704 TG-----CAATATAGGGAAGATGATG---TAACCGGCATATTAAATGGCA 745
|| ||| |||| |||| |.||.|||||.|||||.||.|
BL01416___glg 704 TGTCAGACAA------GAAG--GATGCACTGACAGGCATTTTAAACGGGA 745
BSNT_04500___ 746 TTGATGATACGTTCTATCAGCCGAAAAGCGACCCTTATATA-GAGGCGCA 794
||||.|||..|.|.|| |||||||| ||.| ||..||||
BL01416___glg 746 TTGACGATGTGCTGTA------------CGACCCTT-TAAACGATCCGCA 782
BSNT_04500___ 795 -ATACGATTCAGGGGATC-TTGC-ATG----CAA----GCTGGAAAAC-- 831
|| ||||| ||| ||.| ||| ||| |..|||||||
BL01416___glg 783 CAT-CGATT------ATCATTACGATGCCGTCAACCGGGACGGAAAACGG 825
BSNT_04500___ 832 -AAAACGAAGC-----TTCAGCGGCGGATGGGGCTTCCAGAGAAAAACGA 875
||||..|||| |.|||..|....|.||.||.||.|.|||..|.||
BL01416___glg 826 AAAAATAAAGCCGTGATCCAGAAGACATTCGGTCTGCCGGTGAATGAAGA 875
BSNT_04500___ 876 TATTCCGCTGATCAGTATGGTGACAAGGCTCACTAAACAAAAGGGGCTT- 924
.||||||||.|||||.||||||.|||||||.||.||.||||| .|||||
BL01416___glg 876 CATTCCGCTCATCAGCATGGTGGCAAGGCTGACGAAGCAAAA-AGGCTTC 924
BSNT_04500___ 925 GATCTGGTC---CGCAGAATTATGCACGAACTTCTTGAGGAGCAAGACAT 971
|||.||.|| || .|.|| ||||.|||||..||||.||..|||||||
BL01416___glg 925 GATTTGATCAAGCG-GGTAT--TGCATGAACTGTTTGAAGAAGAAGACAT 971
BSNT_04500___ 972 ACAGCTGGTTGTGCTGGGCACAGGAGAA-CGTGAATTTGAAGATTATTTC 1020
.||||||.|.||..|.||.||.|||||| || |||||||||.||||.|||
BL01416___glg 972 GCAGCTGATCGTTTTAGGAACCGGAGAAGCG-GAATTTGAAAATTACTTC 1020
BSNT_04500___ 1021 CG--GTATGCAGAATTTGCTTTTCATGAGAAGTGCCGGGCTTATATCGGA 1068
|| .||||.||.| ||||||||..||.|.||||..|||.||||||||.
BL01416___glg 1021 CGCTATATGGAGCA--TGCTTTTCCGGACAGGTGCAAGGCGTATATCGGT 1068
BSNT_04500___ 1069 TTTGATGAGCCGCT-AGCC-CATCAAATTTAT---GCGGGCTCTGATATG 1113
|||.||||.||||| |||| || |.|||||| |||.|| |||.|.
BL01416___glg 1069 TTTCATGAACCGCTCAGCCGCA--AGATTTATGCCGCGAGC---GATCTT 1113
BSNT_04500___ 1114 TTTTTGATGCCGTCGAAATTTGAGCCGTGCGGTTTGGGGCAGCTCATTGC 1163
||..|||||||.||.|||||.||||||||||||.|.||.|||||.|||||
BL01416___glg 1114 TTCCTGATGCCTTCAAAATTCGAGCCGTGCGGTCTTGGACAGCTGATTGC 1163
BSNT_04500___ 1164 TCTTCA-ATATGGCGCCATTCCGATTGTCAGGGAAACGGGCGGTCTTTAC 1212
|.||| .||.|||||..|.|||.|||||||||||||.|||||.|||.|.
BL01416___glg 1164 -CCTCAGGTACGGCGCGGTGCCGGTTGTCAGGGAAACAGGCGGGCTTCAT 1212
BSNT_04500___ 1213 GACAC--TGTCCGTGCCTATCAGGAGGAAGA----GGGAACGGGCAATGG 1256
||.|| ||.|| ||.||.|.||| ||.| |.||| |||||.||
BL01416___glg 1213 GATACGGTGACC--GCTTACCGGGA--AACAACCGGTGAA--GGCAACGG 1256
BSNT_04500___ 1257 CTTTACGTTTTCCGCC---TTTAATGCGCATGATTTGAAATTTACGATTG 1303
.|||||||| |||| |||||.||.||||||.||||...||||||..
BL01416___glg 1257 TTTTACGTT---CGCCCATTTTAACGCCCATGATATGAAGCATACGATCA 1303
BSNT_04500___ 1304 AACGAGCGCTGGCGTTTTATCGCCAACAGGATGTATGGAAG--------A 1345
||.||||.|||.|.||||||| ||||| |..|||| |
BL01416___glg 1304 AAAGAGCACTGTCATTTTATC----ACAGG----AAAGAAGAGTGGGGCA 1345
BSNT_04500___ 1346 GCATCGTGAAGACCGCTATGAATGCA---GATTACAGCTGGGGGAAGTCG 1392
|.|||||..|.|..||.|||| || |||..||||||||....|||.
BL01416___glg 1346 GGATCGTTCAAAAAGCGATGA---CACATGATGTCAGCTGGGCTTTGTCA 1392
BSNT_04500___ 1393 GCTAAAGAGTATCAGCGTATTTTCGAG-CAGGTGACAAGGAGTGGACG-G 1440
||.....|||||||||| .||.|..|| |.||.||.||.| |.|||.| |
BL01416___glg 1393 GCCCGTCAGTATCAGCG-GTTATACAGCCGGGAGATAAAG-GGGGAAGCG 1440
BSNT_04500___ 1441 GATGTTCTCGAGTAA 1455
.||||||||.|||||
BL01416___glg 1441 CATGTTCTCAAGTAA 1455
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