Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03783 and BL01412
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_03783___yqeZ.1.5803.seq
# -bsequence dna-align/BL01412___yqeZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03783___yqeZ-BL01412___yqeZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03783___yqeZ-BL01412___yqeZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03783___yqeZ
# 2: BL01412___yqeZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1389
# Identity: 955/1389 (68.8%)
# Similarity: 955/1389 (68.8%)
# Gaps: 144/1389 (10.4%)
# Score: 3115.5
#
#
#=======================================
BSNT_03783___ 1 TTGCTTCAAATCAAAGGATTCCG------TGCTGCTCT---------TTT 35
|||||.| |.|||..|||..| ||.|||||| |||
BL01412___yqe 1 TTGCTGC---TGAAAAAATTTAGAATTTTTGTTGCTCTGGCCTGCGGTTT 47
BSNT_03783___ 36 GGGTATATTTTTGCTTTCTTTATTAGGCGTACAGCTGAACGCAAAAGCAG 85
.|.|.||||.|| .|||.|||||||.||..|||.||..|||||.|
BL01412___yqe 48 TGTTTTATTCTT------ATTACTAGGCGTTCATTTGACCGTGAAAGCGG 91
BSNT_03783___ 86 A-AAAGCAAACTGTTTATGTGATTCCGGTTGAAAAAAATGTCGAACAGGG 134
| ..|| |.||.||.|||||.||||||.|.|||.|||..||.|||.|.||
BL01412___yqe 92 ATGGAG-ATACAGTGTATGTCATTCCGATCGAAGAAACCGTTGAAAAAGG 140
BSNT_03783___ 135 TCTCGTCTCGTT-----TTTGT--CCCGTTCGTTACAAGACGCAAAGGAT 177
.|| || |||.| ..||.||.||.|||||.||..|.|||
BL01412___yqe 141 GCT-------TTCAAAATTTCTTGAGCGCTCATTTCAAGAAGCGGAAGAT 183
BSNT_03783___ 178 GCACATGCAGACCATATTATTCTTGATATCAATACCCCGGGGGGATTGGT 227
....||||..|.|||||.||.||.||||||||||||||.||.|||..|||
BL01412___yqe 184 ATGTATGCCAAACATATCATACTCGATATCAATACCCCCGGCGGAGCGGT 233
BSNT_03783___ 228 CAAATCTGCTATTGATATGGCCGATTTGATAACCGATA-------GCGAG 270
|.|..|.|...||||.||||| ||||| ||||| .|||.
BL01412___yqe 234 CGACGCAGTCCTTGACATGGC-----TGATA--CGATACATAACTCCGAC 276
BSNT_03783___ 271 ATCCCCGTAACTGCATATGTCAACAAACGCGCGTTGTCTGCTGGTGCATA 320
||.||.||.||.||.|||||.||.|.|.|.||..||||.||.||.||.||
BL01412___yqe 277 ATTCCGGTGACCGCTTATGTGAATAGAAGGGCTCTGTCCGCAGGCGCTTA 326
BSNT_03783___ 321 TATTGCACTTCAA-GCAGATCACATTTATATGGCGCCTGGCGGAAAAATG 369
..|.|| |||.|| |||||..|.||||||||||||||.||||||||||||
BL01412___yqe 327 CCTCGC-CTTGAATGCAGACGATATTTATATGGCGCCCGGCGGAAAAATG 375
BSNT_03783___ 370 GGAGCCGCCGCGATTGTTGATGGCCAAGGCAATGCCGCTGACCAAAAAGC 419
|||||.||||||||..||||....||.||.||||||||||| |||||||
BL01412___yqe 376 GGAGCTGCCGCGATCATTGACACGCAGGGAAATGCCGCTGA-CAAAAAG- 423
BSNT_03783___ 420 TC--AATCACTTTGGCTGGCAGAGATGGAAGATGCCGCAGTGAAAAATAA 467
|| ||||.||.||||||||.||.|||||||| |||||..|||||.||
BL01412___yqe 424 TCGGAATCGCTGTGGCTGGCTGAAATGGAAGA---CGCAGCCAAAAAAAA 470
BSNT_03783___ 468 C---CGCGATCCAAAATATGCGCTCGCAATGGCTGACCCAGATATAGATG 514
| ||.|||||.|||||.||.|||||.|||||.||..||||..|.||||
BL01412___yqe 471 CGGACGTGATCCGAAATACGCTCTCGCGATGGCCGATGCAGACGTCGATG 520
BSNT_03783___ 515 CCAAGGAAGTCGGCGCGCCTAAGGGAGATCTGCTGACACTTAA-CGCAGA 563
|.||.|||||.||.|||||.|||||.||.|||||.||| |||| |.|.||
BL01412___yqe 521 CTAAAGAAGTAGGGGCGCCAAAGGGCGAGCTGCTCACA-TTAAGCCCTGA 569
BSNT_03783___ 564 CAAGGCAACTG-AGGTAGGCTATTCAGAAGGCAC------------TGCT 600
|||.|| .||| |.||.||||||||.|||||||| ||.|
BL01412___yqe 570 CAAAGC-GCTGAAAGTCGGCTATTCCGAAGGCACAGTTTCGAGCCTTGAT 618
BSNT_03783___ 601 GACAATTTGTCCACGCTCGTAAAGAAGCTTGGGTTCGAA-AAAGCGCAGA 649
||...|||| ||.|||| ||..||.||| .|.||..|.|
BL01412___yqe 619 GATCTTTTG------------AAAAAGC-TGAATTTGAAGGATGCCAAAA 655
BSNT_03783___ 650 TC-AGC-TACGCAAAGGAGAGCTTTGCGGAAAAGACAGCAAGGTGGCTGA 697
|| ||| | ||..|||..||||||||.||||||...||.||||...|.|
BL01412___yqe 656 TCGAGCGT--GCCGAGGTAAGCTTTGCCGAAAAGGTGGCCAGGTTTATCA 703
BSNT_03783___ 698 CGAATCCGGTCATTGTCCCTATTCTGCTGACAATCG-----CTTTTTTAG 742
||.||||||||.|..|.||.|||||.||..|||||| | |.|
BL01412___yqe 704 CGCATCCGGTCGTGATTCCGATTCTTCTTTCAATCGGAAGCC-----TCG 748
BSNT_03783___ 743 GTCTGACGGTGGAGCTTTTTTCCCCGGGTGTCGGCCTCCCTGGAACGGCT 792
|.||||..||||||||||.|||.||.|||.|.||..|||| |||||
BL01412___yqe 749 GGCTGATTGTGGAGCTTTATTCTCCTGGTTTTGGGATCCC-----CGGCT 793
BSNT_03783___ 793 -----GGACTCATTGCGTTATTGCTGTTCTTCTACGGGCATCTCGCAGCA 837
|||||||..||.||..||||.||.||||||||.|||||||..||.
BL01412___yqe 794 TTATGGGACTCACCGCATTGCTGCTCTTTTTCTACGGTCATCTCGTCGCC 843
BSNT_03783___ 838 GGCCTTGCCGGGTAT-GAGACGGTTCTCCTCTTTATAGCAGGGGTGATT- 885
||.|||||| ||.|| ||.|||.|.||.||.|||..||||||..|.|||
BL01412___yqe 844 GGGCTTGCC-GGAATGGAAACGATCCTTCTGTTTGCAGCAGGCATTATTT 892
BSNT_03783___ 886 --CTCATTCTGCTT-GAGATTTTTCTTCCCGGAGGAAT--CATTGGATTA 930
.||||| || |||||||||||.||.||.||||| || .|||||.
BL01412___yqe 893 TAATCATT----TTAGAGATTTTTCTGCCGGGCGGAATAGCA-GGGATTG 937
BSNT_03783___ 931 CTGGGCTTAGGA--GCGATTATTGCGAGCCTGTTTTTAGCCGCGGGGAGC 978
|.||.|| || ||.|||.||||||||||.||||||||..||||.|||
BL01412___yqe 938 CCGGCCT---GATCGCAATTGTTGCGAGCCTCTTTTTAGCTTCGGGAAGC 984
BSNT_03783___ 979 TTCACTGTCATGGCGGTTTCTCTCTTGATCGCCTCAGCTGTTTCGATTAC 1028
||.|..||||||||.||.||..|.|||||.||..|.|||||||||||..|
BL01412___yqe 985 TTTAAGGTCATGGCCGTCTCCATTTTGATTGCAACTGCTGTTTCGATAGC 1034
BSNT_03783___ 1029 AGCTTTTATTTTACTGACAAGGGTGTTGGGAAAGCGTATGAAATTCTTTA 1078
.||.|..|||.||.||||||||||||||||.||||||||||||||.||||
BL01412___yqe 1035 GGCATCCATTCTATTGACAAGGGTGTTGGGTAAGCGTATGAAATTTTTTA 1084
BSNT_03783___ 1079 AGAAATTGATATTAAATGATTCTACAAACACGGAGAGCGGCTACGTTTCA 1128
|.||||||||.||||..||.||.||||.|||.||.|||||.|||||.|||
BL01412___yqe 1085 AAAAATTGATCTTAACCGACTCGACAAGCACAGAAAGCGGATACGTGTCA 1134
BSNT_03783___ 1129 AATCAAA---CGCGCACGGACTTAATGGGAAAAGTGGGTATAACCTTTAC 1175
|||.||| .|||| ||.|||||.||.|||.|.||..|.||.|.|||
BL01412___yqe 1135 AATGAAAGCCGGCGC---GATTTAATTGGCAAAATCGGCGTCACGTATAC 1181
BSNT_03783___ 1176 ACCGCTGCGTCCTTCCGGTACCGTGATTATTGATGATGAACGCCTTGACG 1225
||||||..|.||.|||||.||.||.||.||.||.||||||||.|||||.|
BL01412___yqe 1182 ACCGCTCAGACCGTCCGGAACGGTCATCATCGACGATGAACGGCTTGATG 1231
BSNT_03783___ 1226 TTGTTTCGGAGGGATCGTTTACAGAAAAAGATAAAAAAGTAAAAGTGATT 1275
||||.||.||.||.|||||.||.|.|||.|||||.|||||.||||||.||
BL01412___yqe 1232 TTGTATCTGAAGGCTCGTTCACCGCAAAGGATAAGAAAGTGAAAGTGGTT 1281
BSNT_03783___ 1276 AAAGTAGAAGGCTCACGCATTGTCGTGAGAGAAATTTAA 1314
|||||.|||||||||||||||||.|||||||||.|.|||
BL01412___yqe 1282 AAAGTGGAAGGCTCACGCATTGTTGTGAGAGAATTATAA 1320
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