Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03781 and BL01410
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_03781___yqfB.1.5803.seq
# -bsequence dna-align/BL01410___yqfB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03781___yqfB-BL01410___yqfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03781___yqfB-BL01410___yqfB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03781___yqfB
# 2: BL01410___yqfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 505
# Identity: 270/505 (53.5%)
# Similarity: 270/505 (53.5%)
# Gaps: 140/505 (27.7%)
# Score: 586.5
#
#
#=======================================
BSNT_03781___ 1 ATGGAAGATTTACT----GACCAATCCGCTTATTATTGCAGCGATCATCG 46
.||...|||.|.|| || |||||||.||||.||.||.||.|||||||
BL01410___yqf 1 TTGCTTGATATCCTGTTCGA-CAATCCGATTATCATGGCGGCCATCATCG 49
BSNT_03781___ 47 GAATCATTT-CTGCGATTT---------TCGGCAAAAA-GAGCAAA--GA 83
.|..||||| ||.| ||.| ||||.||||| ||..||| ||
BL01410___yqf 50 CAGCCATTTCCTTC-ATATTCAACAAGCTCGGAAAAAACGATGAAAATGA 98
BSNT_03781___ 84 AGAA---AAGC-AAAACAGCCAAAAAAGAAAAAAACCTCAACACGTGCAA 129
|||| |||| |||||.|.| .|||.||||
BL01410___yqf 99 AGAAGCGAAGCGAAAACCGGC-------------GCCTGAACA------- 128
BSNT_03781___ 130 TCTGCTTCTTCTCAAAAGAAGCAGTC----AA----AAGAAGATGCCCCT 171
.||.|.||.||||.| || ||..|||.|.|.|.
BL01410___yqf 129 -----------GCAGAGGACGCAGACGCCGAAGCCGAAACAGACGGCGCA 167
BSNT_03781___ 172 GCACCTATCC--CTAACCGTATGGAACAGGCAAGACGGGAAGCGGAAG-- 217
||||| .||| |.||...||...|.||| .|.|.||.|||||.||
BL01410___yqf 168 GCACC-GTCCTGCAAAAAATAAAAACCAG---CGGCCGGCAGCGGCAGCT 213
BSNT_03781___ 218 --AAAGA-CGCAG----GGAAACAGCA-------AGAAACCTGAAAGGGC 253
|||.| ||||| ||||.||| | |||| |.|||
BL01410___yqf 214 GCAAACAGCGCAGATATGGAAGCAG-AGCTCCGCAGAA---TCAAA---- 255
BSNT_03781___ 254 TGGAA-----CGAG------AT-CTTGCTGCTGCCAAAC--------AAA 283
||| |||| || |..||.|.|| ||| |||
BL01410___yqf 256 --GAAGATGCCGAGCGTTCCATGCCGGCCGTTG---AACGGACCATTAAA 300
BSNT_03781___ 284 AAACAG-------------TATACACAAAACAAAAAATGCTTCAGGTGAA 320
||.||| |..||...||.|||.|..||||..|..||||
BL01410___yqf 301 AAGCAGAGCAGCCGGGTGATCAACCGGAAGCAAGAGCTGCTCGACATGAA 350
BSNT_03781___ 321 TAAGGACACCGTCGTACAGGGAATCGTTCTAGGAGAGGTGTTCGGGCCTC 370
|||..|.||..|.||.||.||.||.||.||..|.||.||.|||||.||||
BL01410___yqf 351 TAAAAAAACAATAGTTCAAGGCATTGTCCTCAGTGAAGTATTCGGCCCTC 400
BSNT_03781___ 371 CACGGGCGAAAAAACCTCACCGTAC-----GATGCGCTCAGCCCGTAAAA 415
|.|||.|||.|||.||.|| .||| ||.|||| |.||| |||||
BL01410___yqf 401 CGCGGTCGAGAAAGCCGCA--TTACACAATGAGGCGC-CGGCC--TAAAA 445
BSNT_03781___ 416 ATTAA 420
.||||
BL01410___yqf 446 TTTAA 450
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