Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03409 and BL01395
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03409___ypfA.1.5803.seq
# -bsequence dna-align/BL01395.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03409___ypfA-BL01395.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03409___ypfA-BL01395.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03409___ypfA
# 2: BL01395
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 816
# Identity: 392/816 (48.0%)
# Similarity: 392/816 (48.0%)
# Gaps: 312/816 (38.2%)
# Score: 784.5
#
#
#=======================================
BSNT_03409___ 1 ATGATAGAGATTGGAGAAACTGTACTTTTAG--AATAT-------ATAGA 41
||| .||..||||| ||||| |||||
BL01395 1 ----------TTG--------TTATCTTTAGGAAATATTTTAACAATAGA 32
BSNT_03409___ 42 A---GAAAATGAATTGAAAAAG---------GCAAAAAGCAAGGCGGTCA 79
| |||||.|||.|..||.|| ||.||||||||.|.|.|..
BL01395 33 ATTTGAAAACGAAATTCAAGAGTATGTCCTCGCGAAAAGCAAAGTGCTAT 82
BSNT_03409___ 80 GCATCGAAAACAATGAACTTTTGATCGCG-----TATCCTGTTGATGTAG 124
.|||.||..|||||| ||||.| |.| |||||||||||||.||
BL01395 83 CCATTGAGGACAATG---TTTTAA--GAGTACATTATCCTGTTGATGAAG 127
BSNT_03409___ 125 TTACAGGGCGAACTGTGATTTTAC--ATAACGATATGGAAGTAATGGTAG 172
..||||||.|||||||.|||.|.| |.|| |||..|.||.|||.||..
BL01395 128 AAACAGGGAGAACTGTTATTATTCCAACAA--ATACAGTAGCAATAGTTC 175
BSNT_03409___ 173 AGTTTGTGGGAAAAGACG----AAGTTCCTTATCGCTTTATAAGCC-GTA 217
|.|||.| |||.|| | ||||.||.|||...|||| || ||.
BL01395 176 ACTTTAT---AAATGA-GCAACAAGTCCCATATAAATTTA----CCAGTG 217
BSNT_03409___ 218 TAAAAGGTAAAGTGA-------------AGGACAAAC-----TTCAAATG 249
||| ||.||.|| ||||.|.|| ||.|
BL01395 218 TAA----TACAGGGACGAGAGATCTATCAGGATATACCTGTATTAA---- 259
BSNT_03409___ 250 ATCTGTCTT-----GAAGTGCCTCCACGTGAAA----AAATGAAAAGAAT 290
||.|||.|| |||| || ||||||.||.|||
BL01395 260 ATATGTATTTACCCGAAG-------------AAGATCAAATGACAAAAAT 296
BSNT_03409___ 291 CCAGCGCCGCCAATATGTAAG---------AACTGATGCCGTATTAGATG 331
.||..|.||.||||.|.|.|| ||| |||.|| ||
BL01395 297 TCAAAGACGGCAATTTTTTAGAGTAAATACAAC-GATTCC--------TG 337
BSNT_03409___ 332 TGCAAATTCAGCC----GGGA--------AATG---AAGAAGAGAT-CCG 365
| ||...||.||| .||| |||| || ||.|.|| |.|
BL01395 338 T-CACTGTCCGCCCATATGGATCTGGTTCAATGTTTAA-AACATATACAG 385
BSNT_03409___ 366 CACACTATCTTATAACATCAGTGCAGGCGGCATCGCCGTGGTTTTAGCTG 415
|| ||.||||||||.||.||| ||||
BL01395 386 CA-----------AATATCAGTGCTGGAGGC---------------GCTG 409
BSNT_03409___ 416 ATGGCCTTTCTTTTCAATCGGGGGAATCATTG------CGCCTGATCATC 459
|.|| |||.|||| ||| ..||.
BL01395 410 ---------CGTT-----------AATTATTGAAGAGACGC----AAATA 435
BSNT_03409___ 460 C-----GTCTTCCTGAAGAGG-----------AGCA--CACACGTCAAAT 491
| | |.||||||| |||| ||...|.|||||
BL01395 436 CACGAAG-----CGGAAGAGGATTTAAATTTAAGCATTCATCTGCCAAAT 480
BSNT_03409___ 492 -AGAAACA-GAAGCAGTTGTCA--GACGAATCTTTAATGACCCCAAGTCA 537
||..||| ||.|.|..|||.| |||| ||.||| |.|||||||
BL01395 481 GAGGGACATGATGAAAATGTGATTGACG-----TTTATG--CTCAAGTCA 523
BSNT_03409___ 538 ------------------GGAAAAC--GCAAA------ATGACTTTAGAG 561
|||.||| .|||| |||||..|.||.
BL01395 524 AACGCACTTACATAGATCGGAGAACAAACAAACAGATCATGACAGTTGAA 573
BSNT_03409___ 562 TAT-TCAGAAAT---TGCAGCA-GGTG-ACCAGCAGGCTTTGCTTCAATA 605
|.| ||| |.|| || |.|| |.|| ||.|||| ||| .|.||.||
BL01395 574 TTTATCA-AGATGGATG-AACATGATGAACAAGCA--CTT--GTACATTA 617
BSNT_03409___ 606 CTGCATCCGGCGCCAGTTAAAT---------AAG--AGAAGAAAGGCCCG 644
.|||| |.|||| ||| ||||||||
BL01395 618 TTGCA-----------TAAAATTGCAATTGGAAGAAAGAAGAAA------ 650
BSNT_03409___ 645 AATGGAATAA------ 654
|.||.|||..
BL01395 651 ACTGAAATCTGATTAG 666
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