Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03557 and BL01385
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_03557___yqjE.1.5803.seq
# -bsequence dna-align/BL01385___yqjE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03557___yqjE-BL01385___yqjE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03557___yqjE-BL01385___yqjE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03557___yqjE
# 2: BL01385___yqjE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1132
# Identity: 863/1132 (76.2%)
# Similarity: 863/1132 (76.2%)
# Gaps: 29/1132 ( 2.6%)
# Score: 3256.5
#
#
#=======================================
BSNT_03557___ 1 ATGGTGAATGAAAAACGCCTGCTGGAAGAATTTTTAGAGCTTGTCCAAAT 50
.|||||.||||||||.||.|.|||||.||||||||.|||||.|||||
BL01385___yqj 1 ---ATGAATAAAAAACGCTTGTTAGAAGAGTTTTTAGAACTTGTGCAAAT 47
BSNT_03557___ 51 TGACTCAGAAACAAAGCACGAAGCTGAAATCTGCAAAGTGCTGAAACGAA 100
|||.||.||.|||||.||.|||||||||||||||||.|||||||||..||
BL01385___yqj 48 TGATTCCGAGACAAAACATGAAGCTGAAATCTGCAAGGTGCTGAAAGAAA 97
BSNT_03557___ 101 AATTTTCTGATTTAGGTGTGGA---CGTTAAAGAAGACAATACAATGGAT 147
|||||.|.|...|.||..|||| |||..||||.||| ||||.|...
BL01385___yqj 98 AATTTGCGGCGCTTGGAATGGATGTCGTGGAAGATGAC---ACAAAGCCA 144
BSNT_03557___ 148 ATCACGGGCCACGGAGCCGGTAACCTGATTTGCACGCTAAAAGGGACAAA 197
|..||.||.||||||||.||.|||||..|.||||||||....||.||.||
BL01385___yqj 145 AAAACCGGGCACGGAGCAGGCAACCTCGTGTGCACGCTTCCGGGAACGAA 194
BSNT_03557___ 198 ACAAACAGATACGATCTATTTTACATCTCATATGGACACAGTTGTACCCG 247
|.||.|.||.|||||.||.||||||||.||.|||||.||.||.|||||||
BL01385___yqj 195 AGAAGCGGACACGATTTACTTTACATCCCACATGGATACGGTCGTACCCG 244
BSNT_03557___ 248 GAAACGGCGTAAAACCAGTTGTAGAGAACGGTTACGTCAAAACTGACGGC 297
||||.||||||||.||.||..|.||..||||.||.||||||||.||||||
BL01385___yqj 245 GAAAAGGCGTAAAGCCGGTCATTGAAGACGGATATGTCAAAACAGACGGC 294
BSNT_03557___ 298 ACGACGATTTTAGGCGCTGATGATAAAGCGGGATTGGCTGCAATGTTTGA 347
||.||.|||||.||.||.||.||.|||.|.||..|.||.||.|||.|.||
BL01385___yqj 295 ACAACAATTTTGGGAGCCGACGACAAAACAGGCCTTGCAGCGATGCTAGA 344
BSNT_03557___ 348 GGCGATTAAGGTGCTGAAAGAAGAAAACATTGAACACGGCACGATTGAAT 397
.||..|.||.||||||||||||.||||||||...|||||.|||||..|||
BL01385___yqj 345 AGCCGTAAAAGTGCTGAAAGAAAAAAACATTCCGCACGGAACGATCCAAT 394
BSNT_03557___ 398 TCATCATCACAGTAGGGGAAGAATCGGGTCTGATCGGAGCGAAGGCTCTT 447
|.|||||.||.||.||.|||||||||||.||..||||||||||||||||.
BL01385___yqj 395 TTATCATTACGGTCGGTGAAGAATCGGGGCTTGTCGGAGCGAAGGCTCTA 444
BSNT_03557___ 448 GACCGTTCTATGATCACTGC--ATCCTACGGCTATGCTCTTGATTCAGAC 495
||||||||..||||||..|| || |||||.|||||.||||||||.|||
BL01385___yqj 445 GACCGTTCGCTGATCAAAGCCGAT--TACGGATATGCGCTTGATTCCGAC 492
BSNT_03557___ 496 GGAAAAGTCGGAAATATTATTGTGGCCGCGCCGACACAGGCGAAGGTAAG 545
||.||.|||||.||||||||.|||||.|||||||||||||||||..|.||
BL01385___yqj 493 GGGAAGGTCGGCAATATTATCGTGGCAGCGCCGACACAGGCGAAAATTAG 542
BSNT_03557___ 546 AGCGGCAATTTTC---GGGAAAACCGCGCACGCCGGGGTTGAACCTGAAA 592
| ||||.|.|| ||.|||||.||.||.|||||.||.||.||.||||
BL01385___yqj 543 A---GCAACTGTCTATGGAAAAACGGCTCATGCCGGTGTAGAGCCGGAAA 589
BSNT_03557___ 593 AAGGGATTTCAGCGATTACAATCGCTAGCAAAGCCATCTCAAAAATGCCA 642
||||..|.||||||||.||.||||||...|||||.||..|.||||||||.
BL01385___yqj 590 AAGGAGTCTCAGCGATCACGATCGCTTCAAAAGCGATTGCCAAAATGCCG 639
BSNT_03557___ 643 TTGGGCCGTATCGATGAAGAAACAACAGCTAATATCGGCCGGTTTGAAGG 692
.|.|||||.|||||.||.|||||.||.|||||.||||||||.|||||.||
BL01385___yqj 640 CTTGGCCGCATCGACGAGGAAACGACGGCTAACATCGGCCGCTTTGAGGG 689
BSNT_03557___ 693 CGGCACACAAACAAACATTGTGTGCGATGAAGTTCATATTCTTGCTGAAG 742
|||.||.|||||.||.||.||.||||||.||||..|.|||||||||||||
BL01385___yqj 690 CGGAACGCAAACCAATATCGTCTGCGATCAAGTCGACATTCTTGCTGAAG 739
BSNT_03557___ 743 CGCGCTCTTTAGTTCCTGAGAAAATGGAAGCTCAGGTTCAAAAAATGAA- 791
|.||.||..|.|||||.||.|||||||||...|||....||||||||||
BL01385___yqj 740 CCCGTTCGCTTGTTCCGGAAAAAATGGAAAAGCAGACGGAAAAAATGAAG 789
BSNT_03557___ 792 -AGCTGCTTTTGAAGAGGCAGCTGCTGATATGGGCGGACGCGCAGAAGTC 840
|| ||.||||||..||||||.||.||.|||||.||..|.||.||.||.
BL01385___yqj 790 CAG--GCGTTTGAATCGGCAGCCGCCGAAATGGGGGGCAGAGCCGAGGTG 837
BSNT_03557___ 841 GAAATTGAGGTTATGTATCCGGGCTTTAAATATCAAGACGGCGACCAAGT 890
|||||.||.||.|||||.||||||||||||||..|||||||.||.|..||
BL01385___yqj 838 GAAATCGAAGTCATGTACCCGGGCTTTAAATACAAAGACGGTGATCTTGT 887
BSNT_03557___ 891 TGTTGAAATCGCGAAAAAAGCGGCTGCTAAAATCGGACGTCCAAGCGAGC 940
.||||||||.||.||||||||.||.|..||||||||.|||||...|||||
BL01385___yqj 888 CGTTGAAATTGCCAAAAAAGCCGCCGGGAAAATCGGCCGTCCGTACGAGC 937
BSNT_03557___ 941 TGCAAACGAGCGGCGGCGGAAGCGATGCGAACGTAATCGCTGGTCATGGC 990
||...|||||||||||.|||||||||||||||||.|||||.||.||.|||
BL01385___yqj 938 TGTTGACGAGCGGCGGAGGAAGCGATGCGAACGTCATCGCAGGCCACGGC 987
BSNT_03557___ 991 ATCCCGACGGTCAATCTTGCTGTCGGTTATGAGCAAATCCATACAAAAAA 1040
||.|||||.|||||.|||||.|||||.|||||.||.||||||||.|||||
BL01385___yqj 988 ATTCCGACTGTCAACCTTGCAGTCGGATATGAACAGATCCATACGAAAAA 1037
BSNT_03557___ 1041 TGAAAAAATGCCGATCGAAGAGCTCGTTAAAACGGCAGAAATGGTTGTTG 1090
.||||||||||||||.||.||.||.||.|||||.|||||||||||.||||
BL01385___yqj 1038 CGAAAAAATGCCGATTGAGGAACTTGTCAAAACTGCAGAAATGGTCGTTG 1087
BSNT_03557___ 1091 CCATTATTGAAGAGGCGGCAAA------ATAA 1116
||||||||||.||.|..||.|| ||||
BL01385___yqj 1088 CCATTATTGAGGAAGTAGCGAATCGTTCATAA 1119
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