Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06215 and BL01377
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:11
# Commandline: needle
# -asequence dna-align/BSNT_06215___yycD.1.5803.seq
# -bsequence dna-align/BL01377___yycD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06215___yycD-BL01377___yycD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06215___yycD-BL01377___yycD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06215___yycD
# 2: BL01377___yycD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 215
# Identity: 135/215 (62.8%)
# Similarity: 135/215 (62.8%)
# Gaps: 31/215 (14.4%)
# Score: 360.5
#
#
#=======================================
BSNT_06215___ 1 ATGATAAAGAAATATGCGATTACGCCTAATGTTGATGCGGACGGCTGGTT 50
||.|||...|||.||.|..|.||.||||..||..|.|||||.|||||
BL01377___yyc 1 ---ATGAAGGTTTATACGGTATCACCAAATGCCGAGACAGACGGGTGGTT 47
BSNT_06215___ 51 TATTG-AGGTGGAGAATGTAGCGCC----GACAGCTTTGT-ATACGTCTA 94
| ||| |..||||..||...||||| | ||||||.| |||| |
BL01377___yyc 48 T-TTGAAACTGGAAGATACGGCGCCTGTTG--AGCTTTATGATAC----A 90
BSNT_06215___ 95 A----AGACGCCGCTATTGAAAAGGCCAAACAGGTGGCTAAGGAAAACAG 140
| |||.|||| |.|||||.|...||.||.||||.||.||.|||.|
BL01377___yyc 91 AGGACAGAGGCCG---TGGAAAAAGGAGAAGAGATGGCGAAAGAGAACCG 137
BSNT_06215___ 141 TCCGTCTAAGCTTGTAATTTATGAC---CAGTTTAA-AAATGTGGAAGAA 186
|||..|.||||||||.||.|||||| |||...|| ||| |||||.
BL01377___yyc 138 TCCTGCGAAGCTTGTCATCTATGACCGGCAGGACAACAAA----GAAGAC 183
BSNT_06215___ 187 GAACACTCATTTTAA 201
||||..||.|.||||
BL01377___yyc 184 GAACGGTCTTATTAA 198
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