Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03264 and BL01368
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_03264___ypgQ.1.5803.seq
# -bsequence dna-align/BL01368___ypgQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03264___ypgQ-BL01368___ypgQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03264___ypgQ-BL01368___ypgQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03264___ypgQ
# 2: BL01368___ypgQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 737
# Identity: 406/737 (55.1%)
# Similarity: 406/737 (55.1%)
# Gaps: 184/737 (25.0%)
# Score: 1050.0
#
#
#=======================================
BSNT_03264___ 1 ATGAAGGAAT--------TGAAGCAGG------CAGAGCAAATCAG---- 32
|| ||||.|||| ||||.||.|||.|
BL01368___ypg 1 --------ATGGCTGGGCTGAATCAGGAACAAACAGAACAGATCCGCTTG 42
BSNT_03264___ 33 ------GACATGGGTTCAATCTATCCTGACTGACGAAAGCTCTGGACATG 76
|| ||||||..||...|..||..|||.||||.||.|.||.||||
BL01368___ypg 43 ATGTCCGA-ATGGGTAAAAGAGAAGCTTTCTGCCGAAGGCACAGGTCATG 91
BSNT_03264___ 77 ACTGGCATCATGTATC--AAGAGT----------AGCAGATCTTGCAG-- 112
||||||..|| ||.| |||.|| ||| ||| |||
BL01368___ypg 92 ACTGGCTGCA--TACCGAAAGGGTGAGGAACGTAAGC----CTT-CAGAT 134
BSNT_03264___ 113 CGTATATTGGAGAAAAGGAAAAAGCGGATTTGTTCATTGTTGAAACGGCG 162
||.|.| ||||.||| ..||.||..||||.|| .||.|..
BL01368___ypg 135 CGCAAA----AGAAGAGG---GTGCAGACCTGTTTAT------GACCGAA 171
BSNT_03264___ 163 GCTT------TGGTTCATGATTTAATTGATGTGAAGCTGCCTGA----CA 202
|||| |..|.||||||.|.|||||||..||||||.|.|| ||
BL01368___ypg 172 GCTTGCGCACTTCTCCATGATGTGATTGATGAAAAGCTGTCCGATGAGCA 221
BSNT_03264___ 203 C--GGT-------CAGG--------------CTTTCTGTGAGCGAAGTAT 229
| ||| |||| ||.|| |||||.||
BL01368___ypg 222 CCGGGTTCCGCTGCAGGAGCTGAAAAGGCGCCTGTC------CGAAGAAT 265
BSNT_03264___ 230 ATGATCAGCTCGTTTTTTTCGGAGTAGGAAAAGATAATGCTGACAGGGTG 279
.|| ||.|| ||...|||||.| |.||||.||.|.
BL01368___ypg 266 -GGA--AGGTC----------GATCCGGAAACG-----GTTGACGGGATT 297
BSNT_03264___ 280 ATTCATATTATAACAAGGATGTCCTTTCGGGACAGGGGGAAAT----TGG 325
.||..|||.||.|||||.||.||.||..|.|||||.|.||||| .|.
BL01368___ypg 298 TTTGCTATCATCACAAGAATTTCATTCAGAGACAGAGAGAAATATAAAGA 347
BSNT_03264___ 326 CGAAGGAGCCGCTCTCAATTGAAGGAAAAGCCGTACAGGATGCTGACAGA 375
|||| |..||.||||..|||||||..||.||.||||||||.||..|.
BL01368___ypg 348 CGAA----CTTCTTTCAAAAGAAGGAATGGCTGTCCAGGATGCCGATCGG 393
BSNT_03264___ 376 CTTGATGCGATTGGTGCTGTCGGCATTGCGAGAGCTTTCATGTTTGCGGG 425
|||||||||||.||.||.|||||.||.||.||.|||||.||||.||||||
BL01368___ypg 394 CTTGATGCGATCGGCGCCGTCGGGATCGCCAGGGCTTTGATGTATGCGGG 443
BSNT_03264___ 426 CGCAAAAGGGCATGGCCTTTATGGAGATGAGCAAAGCGCCTAC------- 468
.|||||.||.|||..|||.|||||.|..| ||||.||.|||||
BL01368___ypg 444 TGCAAAGGGCCATCTCCTCTATGGGGGCG-GCAATGCACCTACTGCAGTC 492
BSNT_03264___ 469 -GCTCATTTTTTTCATAAGCTGTTGCGGCTGAAAGATATGATGAATACAG 517
|| ||.||||...|.|||||..|.|...|.||||||.|||||||||||.
BL01368___ypg 493 GGC-CACTTTTACGAGAAGCTTCTCCTTTTAAAAGATTTGATGAATACAA 541
BSNT_03264___ 518 ACACTGCACGGGAACTGGCAGAAGAAAGACACAATTTTATGCTTCAGTTT 567
|.||.|.||||...||.||||||.||||.||.||..|.|||||..|.||.
BL01368___ypg 542 AGACGGGACGGATGCTCGCAGAAAAAAGGCATAAGCTGATGCTCGAATTC 591
BSNT_03264___ 568 GTCCGCCAATTAGAAAAAGAA----------------------------A 589
.||.||.||.|.|||||.||| |
BL01368___ypg 592 CTCGGCGAACTGGAAAATGAATGCGCCTTCTCTAGAGAAAGCCGCCTTGA 641
BSNT_03264___ 590 TA--------CCCGGGATTGATGCCAAAACGTCGTAA 618
|| |..|||.|| |||..|.|| |||
BL01368___ypg 642 TAGATCAGGGCTGGGGGTT-ATGGTAGAA-----TAA 672
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