Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06181 and BL01363
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_06181___rapG.1.5803.seq
# -bsequence dna-align/BL01363___rapG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06181___rapG-BL01363___rapG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06181___rapG-BL01363___rapG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06181___rapG
# 2: BL01363___rapG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity: 737/1191 (61.9%)
# Similarity: 737/1191 (61.9%)
# Gaps: 183/1191 (15.4%)
# Score: 1939.5
#
#
#=======================================
BSNT_06181___ 1 ATGAATAAGATCGCACCCGCAGAAATCGCTAGCATGCTCAACGATTGGTA 50
|||||.||||||||..|.|.||||.||||.|.|||.||.||....|||||
BL01363___rap 1 ATGAACAAGATCGCCGCGGAAGAAGTCGCCAACATCCTTAATACATGGTA 50
BSNT_06181___ 51 CCTTGCTATC--AAGAAACATGAAGTGGAAGAGTCCTCCCGTTTATTTGA 98
||..||.||| ||||| ||||.|..|||.||||...|||..|||||||
BL01363___rap 51 CCGCGCCATCAGAAGAA--ATGATGCTGAACAGTCGATCCGAATATTTGA 98
BSNT_06181___ 99 AGAAGTGAAGCCTTTATTGGATGACATGGAAGAGGATCAGGAGGTGCTTG 148
||||||.||.||..|..|||..||.|||||.||.||.||.|||||..|..
BL01363___rap 99 AGAAGTCAAACCGATGCTGGCAGAGATGGAGGAAGACCAAGAGGTTTTAA 148
BSNT_06181___ 149 CCTAC--TTCTCCTTATTGGAACTGCGCCACAAGGTTTTGCT------TC 190
.|||| ||||| |..||||||||||.||.||..|..|||| |
BL01363___rap 149 TCTACTATTCTC--TGCTGGAACTGCGGCATAAAATCATGCTGTATGAT- 195
BSNT_06181___ 191 ACGAGGCG--AGAGGACAGGGCTTTCAGCATGAGGAGCCTTCTCATATGA 238
|||.||.| |.|.||.|| ..|||||.|||||| || .|.||
BL01363___rap 196 ACGCGGGGAAAAAAGATAG----AACAGCAAGAGGAG--TT----AACGA 235
BSNT_06181___ 239 A---------TGCT-----ACGTCTGACATGCTGAAATATTACTTTTTTC 274
| |||| ||.|.||||||.| |||||||..|..|
BL01363___rap 236 ACGGCGGCAGTGCTGCATCACATATGACATCC-----TATTACTACTACC 280
BSNT_06181___ 275 TGTTTGAAGGCATGTATGAGGCCTATAAAAATAATTATGA-CATTGCCAT 323
|||||..|||....|||||.|..||||||||.|||||||| || .||.||
BL01363___rap 281 TGTTTTCAGGAGCTTATGAAGTGTATAAAAAGAATTATGAGCA-GGCGAT 329
BSNT_06181___ 324 TGGGCTGTATAAAGATGCAGAGCAGTATCTCG-ACA---ACATTCCCGAT 369
..|..|.||||||..|||.|||.||.|.||.| .|| |||| |||
BL01363___rap 330 CAGCTTCTATAAAATTGCCGAGAAGAAGCTTGCTCATGTACAT----GAT 375
BSNT_06181___ 370 CCGATTGAGAAAGCTGAATTTCACCTGAAGGTCGGAAAGCTCTATTATAA 419
...||||||...||..||||||||...||.||||||||||||||.|||.|
BL01363___rap 376 GAAATTGAGGTGGCGCAATTTCACGATAAAGTCGGAAAGCTCTACTATTA 425
BSNT_06181___ 420 GCTGGGACAAAATATTGTGTCCCTCAATCATACACGGCAAGCGGTCAAAA 469
..||||.||.|||||.||.||..|.||.|||||.|||||.|||.|..|||
BL01363___rap 426 CTTGGGCCAGAATATCGTCTCTTTAAACCATACCCGGCAGGCGATGGAAA 475
BSNT_06181___ 470 CGTTCA--GGGAA--GAGACCGATTATAAAAAGAAGCTGGCTTCAGCCCT 515
..|||| |||.| |.|||| ||.|.|.|||.||.|.||| |.||
BL01363___rap 476 TTTTCAAGGGGCATGGCGACC----ATGATATGAACCTTGTTTC--CACT 519
BSNT_06181___ 516 --GATTACCATGTCAGGCAATTTTACAGAGATGAGCCAGTTTGAAGAAGC 563
.|||||.|||.|.||.||||.||||||||||.|..|.|.|..|||.||
BL01363___rap 520 TATATTACGATGGCCGGAAATTATACAGAGATGGGGAAATATACAGAGGC 569
BSNT_06181___ 564 TGAGGCTTATTTGGAC-GAAGCAATTCGGATCACGAGTGAATTAGAG--- 609
.||.|..||||| .|| |||||.||.| || ||| || ||..|.||
BL01363___rap 570 GGAAGAATATTT-AACAGAAGCCATCC--AT-ACG-GT-AAGAAAAGCCG 613
BSNT_06181___ 610 --GATCATTTTTTTGAAGCCCAGCTTTTGCATAACTTCGGCCTT-CTTCA 656
||...||||...|||...|||||..|.||||| ||..||||| |||.|
BL01363___rap 614 GCGACTGTTTTAAAGAAATGCAGCTCCTTCATAA-TTTTGCCTTGCTTTA 662
BSNT_06181___ 657 TGCG--------CAAAGCGGCAAATCAGAAG-AAGCGGTTTCGAAATTAG 697
|||| |||..|||.||| ||| |..|.|||| ||||
BL01363___rap 663 TGCGGCGATGGACAATTCGGAAAA----AAGCATTCAGTTT-----TTAG 703
BSNT_06181___ 698 AAGAGGCCTTACAGAACGAT---GAGTATGCCCGCTCTGCCT---ATTAT 741
||...|..|| |.|.||| |..|||| ||||.| |||||
BL01363___rap 704 AAATCGTTTT---GGATGATCAAGCATATG------CTGCATCAGATTAT 744
BSNT_06181___ 742 TA--TCACT-CTGCCTACCTGCTGATACGAGAGCTGTTTA-------AGA 781
|| |||.| |||..|...|..||||...||||||||||| |||
BL01363___rap 745 TATTTCAATGCTGTGTTTTTAATGATCAAAGAGCTGTTTAAAGTCGGAGA 794
BSNT_06181___ 782 TCAAAAA------GAAAGAACAGGCCTTATCTTATTACCAAGAAGTGAAG 825
.||.||| |.| ||||| ||||.||||||.||||
BL01363___rap 795 CCATAAACGCGCTGCA-------GCCTT------TTACAAAGAAGGGAAG 831
BSNT_06181___ 826 GAAAAATTGACTGCTGAGCCGAATAGAATATGTGAGGCAAAAATAGACAT 875
||||..|.||...|.|.|.||||||.|||||.|||.||.|||||.||.||
BL01363___rap 832 GAAAGGTCGAAATCCGCGGCGAATAAAATATTTGACGCCAAAATCGATAT 881
BSNT_06181___ 876 TTTATATGCCATTTATGCAGAAGGGGGT---CATGCGGAAACGTTTCACT 922
|||||||||...||||||||.||..||| ||.|||| |
BL01363___rap 882 TTTATATGCGGCTTATGCAGGAGATGGTGAACAGGCGG-----------T 920
BSNT_06181___ 923 TA-----TGCAA--ACAACATATGGATGA---CTTGTTGTCCGAGAAAG- 961
|| ||||| ||||||| ||| |.|||| ||..|.||||
BL01363___rap 921 TAAAGACTGCAAAGACAACAT-----TGAAATCCTGTT-TCAAACAAAGC 964
BSNT_06181___ 962 AGTATGACAGTGTAAGAGAACTTTCCATTTTGGCTGGCGAACGGTATAGG 1011
|.||.|||||.|..|||||||||||..|.||..| |||.|| .||.||..
BL01363___rap 965 AATACGACAGCGCCAGAGAACTTTCGCTCTTAAC-GGCCAA-TGTTTACA 1012
BSNT_06181___ 1012 GAACTTGAG---CTTTACAAAGAAGCTGCCCACTTTTTTTATGAAGC-AT 1057
||.| ..|| |||||.||||||||.||.||.||.||||..||||| ||
BL01363___rap 1013 GATC-AAAGTCACTTTATAAAGAAGCCGCACATTTCTTTTTGGAAGCGAT 1061
BSNT_06181___ 1058 TACAGATTGAAGAACTGATTAAACGAACGGAGGTTATATAA 1098
||.|| ..||||||...||.|||..|..|||||..||.|.|
BL01363___rap 1062 TAAAG-CGGAAGAAAAAATGAAAAAAGTGGAGGGAATGTGA 1101
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