Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04407 and BL01359
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04407___msmE.1.5803.seq
# -bsequence dna-align/BL01359___msmE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04407___msmE-BL01359___msmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04407___msmE-BL01359___msmE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04407___msmE
# 2: BL01359___msmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1393
# Identity: 857/1393 (61.5%)
# Similarity: 857/1393 (61.5%)
# Gaps: 251/1393 (18.0%)
# Score: 2441.5
#
#
#=======================================
BSNT_04407___ 1 ATGAAACACACTTTTGTTTTATTTCTCTCTCTTATTCTGC--------TT 42
||||||.|.| |.|||| |||||.||.||||.| ||
BL01359___msm 1 ATGAAAAAAA--------TCATTT-TCTCTTTTGTTCTCCTGATCATTTT 41
BSNT_04407___ 43 GTTCTGC--------CCGGGTGTTCAGCAGAGAAAAGCTCAGCAGATACC 84
| ||||| |.||.||.||.|.|.||| ||.||
BL01359___msm 42 G-TCTGCAATACTTGCGGGCTGCTCCGGAAAGA------------ATGCC 78
BSNT_04407___ 85 GCAAAAA----AG-----ACGTTAACCATTTATTCTACAATGTCAACCGA 125
|.|||.| || |||.|.||.||.|.|||.||||||.|||.|||
BL01359___msm 79 GGAAAGAGCGGAGATGTCACGCTCACAATGTTTTCGACAATGACAAACGA 128
BSNT_04407___ 126 CAGTGAAAGAGATACGTTCAGAAAACTGGCGGCA--GCA------TTCGA 167
||||||||.|.|.|||.|||||| ||| ||| ||.||
BL01359___msm 129 CAGTGAAAAAAACACGCTCAGAA--------GCATCGCAGATGATTTTGA 170
BSNT_04407___ 168 AAAGGAACACAGTGA---CAT-----TC-ATGTCAGCCTTCATTTCCCAG 208
|||.||| |.||| ||| || ||.||||| |||||| |
BL01359___msm 171 AAAAGAA---AATGAAGGCATCAAGATCGATATCAGC-----TTTCCC-G 211
BSNT_04407___ 209 GCAATGACTATGAAAATATGATGCGTGTCAGAATGGCGGCCAATGATTTG 258
||...|||||||||||||||.||||.||||.|||||||||.|||||..||
BL01359___msm 212 GCCCGGACTATGAAAATATGCTGCGCGTCAAAATGGCGGCAAATGACATG 261
BSNT_04407___ 259 CCTGATCTATTCGATACACATGGCTGGGGGAAAATCAGGTACGGAGAATA 308
||||||.|.||||||||.||.|||||||.|||.|||.|.|||||.|||||
BL01359___msm 262 CCTGATTTGTTCGATACGCACGGCTGGGCGAAGATCCGCTACGGGGAATA 311
BSNT_04407___ 309 TACAGCGGATCTCCGGGATATGGAATGGACTCAAG-ATCTTGATCCCAAT 357
.||.||.|||.|....||.|||||.||| .|.||| ||||.|||||
BL01359___msm 312 CACTGCTGATTTAAAAGACATGGATTGG-GTGAAGCATCTCGATCC---- 356
BSNT_04407___ 358 TTAAACAGC-ATCC-----TCAAAAATAAAAGCGGAAAGGTGTATGCCTA 401
||||..| |||| |.||..||.|||..||.||.||.||||||||
BL01359___msm 357 --AAACCTCGATCCGATTTTGAAGGATGAAAAAGGCAAAGTATATGCCTA 404
BSNT_04407___ 402 TCCGATCAATCAGGCAAAAGACGGTCTGGCGTATAACCGCAA------TA 445
.||..|||||||||||||||||||..| |||.|| ||| |.
BL01359___msm 405 CCCTTTCAATCAGGCAAAAGACGGGAT--CGTCTA----CAATGCCGGTC 448
BSNT_04407___ 446 TTTTGGACCGTTACGG---CATTGCTCCGCCGGAAACCATGGATGACTTT 492
|.|||.|....||||| ||...|||||| |.||..||||.||..|.
BL01359___msm 449 TCTTGAAGAAATACGGTCTCAAGCCTCCGC---AGACGTTGGACGAACTG 495
BSNT_04407___ 493 ATCAAAGCACTGAGAACGATTAAAGAAAAGAGCAAGGGAAGCATTGTTCC 542
||..|.||.|||..||||||.||||||||.|||||.||.|||.|..||||
BL01359___msm 496 ATGCATGCGCTGGAAACGATCAAAGAAAAAAGCAACGGGAGCGTCATTCC 545
BSNT_04407___ 543 CTTCTGGTTTGCCGGCTATGACAAAAGCTCATTCGCTCAATATTACGACC 592
.||.|||||||||||.|..||.|||.||.|.||.|||||.|.|||.||.|
BL01359___msm 546 TTTTTGGTTTGCCGGTTCAGATAAAGGCGCTTTAGCTCAGTTTTATGATC 595
BSNT_04407___ 593 AATTCGCTACACCTCTTCTCATCACAGA----CCCTGCCCATAATGAAAA 638
|..|.||.||.||.||.||||||||||| |.|.|| ||||||||
BL01359___msm 596 AGCTTGCCACCCCGCTGCTCATCACAGATGATCGCCGC----AATGAAAA 641
BSNT_04407___ 639 AAAACAGCTCAT----CAACGGCACTTTTCAATG----GAATAAATTTAC 680
||| |||| | .||||||||.||..|.|| ||.||.| .||
BL01359___msm 642 AAA--AGCT--TTGGAAAACGGCACATTCGACTGGTCCGACTACA--CAC 685
BSNT_04407___ 681 TTGCTTATCAAAAATCCTCAAACAAATGCAGAAAGAAAAATTGATCAATA 730
|| .|..||.|||.|.|.|||.|.||||||.||.|..||||||||||||
BL01359___msm 686 TT--CTCGCAGAAACCTTTAAAGAGATGCAGGAAAAGCAATTGATCAATA 733
BSNT_04407___ 731 TCGACGCCGTCACGGCAAAAAAATCACAGCTCATCGAATTAATGGCCCAA 780
..||...|.|.|||||||||...||.||..|..|||||||.|||||.||.
BL01359___msm 734 AAGATATCCTGACGGCAAAACCGTCGCAATTGGTCGAATTGATGGCGCAG 783
BSNT_04407___ 781 AACAAAATCGCCTTTACAATGCAAGGCGGCACC-CTCGGCCAAGACGTT- 828
.|.|||||||..||||| || |||.|.||.|.||.|
BL01359___msm 784 GAAAAAATCGGTTTTAC--------------CCTCTCAGTCACGTCGATC 819
BSNT_04407___ 829 -GCCCAGA-----------TCAACTCTA-ACGTCGAGGTCGGCATTATCC 865
||||.|| |||| ||.| |..||.||.|.|||.|.||.|
BL01359___msm 820 GGCCCTGATACGAGGGAAGTCAA-TCCAGATATCCAGTTAGGCGTGATGC 868
BSNT_04407___ 866 CGACACCTGCCATCCATCCCGGTGATGACCCGATATGGATCGGCGGTGAA 915
||||.||||||.|..||...||.||..|.||||..|||||.||.||.||.
BL01359___msm 869 CGACGCCTGCCGTTTATGAAGGCGACAAACCGAGCTGGATTGGAGGAGAG 918
BSNT_04407___ 916 CGCTACACGCTTGCAGCATGGAAAGATTCGTCTCAATTAA-------AAG 958
|||.|.||..||||.|..|||||||| |||| .|| |||
BL01359___msm 919 CGCCATACCGTTGCTGTCTGGAAAGA-----CTCA--GAACACCTCGAAG 961
BSNT_04407___ 959 AGGCAAAAGAATTTATCGCATTTATGGC-CCGCCCGGCC--AAT--GCCA 1003
|.|||||....|||||||.||| | ||||.|.||| ||| |..|
BL01359___msm 962 AAGCAAAGCGGTTTATCGAATT-----CGCCGCACAGCCCAAATACGTGA 1006
BSNT_04407___ 1004 AACAAATGGCTGAAGCCACATCGCTTCCTTCAGGGC--TGACCAATGTGA 1051
||.|.||.||.||||||||.||..|||| ||| ||| |.|||||.....
BL01359___msm 1007 AAAAGATCGCCGAAGCCACCTCATTTCC-TCA-GGCATTAACCAACACAG 1054
BSNT_04407___ 1052 AAGCTGATATTTTCTACGCAAACGATTATGAGCATTATCAAGATGTCAAA 1101
|||||||.|..|.|||..|.||...||||||.||.|||.||||..|||||
BL01359___msm 1055 AAGCTGAAAACTACTATTCTAAGTTTTATGATCAATATGAAGAAATCAAA 1104
BSNT_04407___ 1102 GTCGAGCCTTACTTCGACCGGTTATACTTGCCAAACGGAATGTGGGATGT 1151
.||||.||.|||||.|||||..|.||..|.||.|.||||||||||||.||
BL01359___msm 1105 ATCGAACCGTACTTTGACCGCGTCTATCTCCCGAGCGGAATGTGGGACGT 1154
BSNT_04407___ 1152 CCTGGGCACGGTTGGGCAGGAGCTCGCGGCTG--ACATTTTGGCGCCTCA 1199
|.||||.|||...||.|||||.||...|||.| ||.|| |
BL01359___msm 1155 CATGGGAACGACGGGACAGGAACTATTGGCCGGTACGTT----------A 1194
BSNT_04407___ 1200 AGACATTTCGCAGAAGCTGGGAAGAGAATATAAACGACTCCGGGAGCAAT 1249
| |||.|||||.|| ||| |||.|..|||
BL01359___msm 1195 A-------CGCCGAAGCAGG--------TAT---------CGGAAAAAAT 1220
BSNT_04407___ 1250 CGGAAACACAGGG-----AGCTG------AAAACAATGAGTGA 1281
|||||| || |||.| |.|||||| ||
BL01359___msm 1221 --GAAACA---GGAATACAGCAGATTACAAGAACAAT-AG--- 1254
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