Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01864 and BL01347
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01864.1.5803.seq
# -bsequence dna-align/BL01347___yitR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01864-BL01347___yitR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01864-BL01347___yitR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01864
# 2: BL01347___yitR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity: 195/328 (59.5%)
# Similarity: 195/328 (59.5%)
# Gaps: 71/328 (21.6%)
# Score: 487.5
#
#
#=======================================
BSNT_01864 1 GTGGAAATACGTATCGATTT---TTTAAT--------AATCTTTATTGCG 39
|.|||| ||| ||.||| ||||..|...||.
BL01347___yit 1 --------ATGTAT---TTTCAATTGAATCCGATATCAATCGCTGCAGCC 39
BSNT_01864 40 CTGCTTTTCTTTTGGGTTGCTTATATG--GTTGGAATAAAAAAGCAAACA 87
|||||.||||||..||..|| ||||| ||.|||||||||||||||||.
BL01347___yit 40 CTGCTGTTCTTTGCGGCCGC--ATATGCAGTCGGAATAAAAAAGCAAACC 87
BSNT_01864 88 TGGATACTTTCC---GGTTT--CCGGGAGTCTCAAA---TACGTGACAAG 129
|||||| ||.| ||||| ||||| ||| ||.|.||..||
BL01347___yit 88 TGGATA--TTGCGGGGGTTTCGCCGGG------AAAGGGTAAGGGATCAG 129
BSNT_01864 130 GATCGTCTGGCTAGAATTGCGGGATACTTTTTTCTCAATTCGGGAATAT- 178
|.|...|||||.|.|||.||.||.||.||.|||.|.||....|||.|.|
BL01347___yit 130 GTTAAGCTGGCGAAAATCGCTGGGTATTTCTTTTTGAACAGCGGATTTTT 179
BSNT_01864 179 -TTATTCTTTTAAATGGTTTTATTT-CATTTCAGGGA-CAAGA-TCAGCT 224
|||| ||||||||||..||.||| || ||..|.| ||||| || ..|
BL01347___yit 180 GTTAT--TTTTAAATGGGGTTGTTTACA--TCCCGTATCAAGAGTC-TTT 224
BSNT_01864 225 GATACCTCCAATGATAGTGGCATACGGTGCCGGAGTT-----ATCATTTA 269
.|.||||.||...||..|.||.|||||| |.|| ||.|||||
BL01347___yit 225 TACACCTTCAGCCATTCTTGCCTACGGT-----ATTTGCACGATGATTTA 269
BSNT_01864 270 TGT--AAATAAAAAAT----TAATATAA 291
||| ||| |||.||| .||||.
BL01347___yit 270 TGTTCAAA-AAACAATGGCCGAATAG-- 294
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