Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01862 and BL01329

See Amino acid alignment / Visit BSNT_01862 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01862___yitL.1.5803.seq
#    -bsequence dna-align/BL01329___yitL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01862___yitL-BL01329___yitL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01862___yitL-BL01329___yitL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01862___yitL
# 2: BL01329___yitL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 865
# Identity:     641/865 (74.1%)
# Similarity:   641/865 (74.1%)
# Gaps:          32/865 ( 3.7%)
# Score: 2316.5
# 
#
#=======================================

BSNT_01862___      1 ATGAGACCAGGGCAGCAATTAACCTTGAGTATAGATCACCAAACCGACTT     50
                     ||||.|||.||.|||||..||||.||||..||||||||..||.|.||.|.
BL01329___yit      1 ATGAAACCTGGACAGCAGCTAACATTGAAAATAGATCATAAAGCAGATTA     50

BSNT_01862___     51 CGGTTACTTTTTAACCGATGGGGAAGATACGATTCTCTTACATAACAGTG    100
                     ||||||||||||.||.||.||.|||....||.|.||..|.|||.|.||.|
BL01329___yit     51 CGGTTACTTTTTGACGGACGGCGAAACGGCGGTCCTTCTGCATCAGAGCG    100

BSNT_01862___    101 AAATGACTGAGGATAT---CGGGGACAGAGACGAAGTAGAAGTCTTTATA    147
                     |.||.||.||||||||   ||||   |||||.||.||.||.||.|||.||
BL01329___yit    101 AGATCACCGAGGATATTGACGGG---AGAGAAGAGGTCGATGTTTTTTTA    147

BSNT_01862___    148 TACGTCGACCAGCAGGAAAGGCTTGCGGCCACGATGAAAATTCCGGTCAT    197
                     ||.|||||.||..|.||..|.||||||||.|||||||.||..|||.||||
BL01329___yit    148 TATGTCGATCACGAAGATCGCCTTGCGGCTACGATGAGAAAGCCGATCAT    197

BSNT_01862___    198 CAGCGCGGATGAATATGGCTGGGTTGAAGTGGTGGAT----AAAGTGGAA    243
                     ||||||.||..||||.||||||||.|||||.||.|||    ..||.||  
BL01329___yit    198 CAGCGCTGAACAATACGGCTGGGTGGAAGTCGTTGATGCCGTCAGCGG--    245

BSNT_01862___    244 GATATGGGCGTTTTCGTTGATGTCGGTTTATCGAAGGACGCACTAGTCGC    293
                       .||||||||||||||.||||||||..|.|||||||||||.||.||.||
BL01329___yit    246 --CATGGGCGTTTTCGTCGATGTCGGGCTCTCGAAGGACGCCCTCGTTGC    293

BSNT_01862___    294 AACTGAGCATTTGCCGCCGTATGAAGATGTCTGGCCGCAAAAAGGGGACA    343
                     .||.||||||.|.||||||||||||...||.||||||||||||||.||||
BL01329___yit    294 GACAGAGCATCTCCCGCCGTATGAATCAGTATGGCCGCAAAAAGGAGACA    343

BSNT_01862___    344 AACTTTACTGTATGCTGAAGGTGACGAACCGGGGGC------GCATGTTT    387
                     ..||.||||||||||||||..|.||      |||||      |.||||||
BL01329___yit    344 GGCTGTACTGTATGCTGAAAATCAC------GGGGCACGGAAGGATGTTT    387

BSNT_01862___    388 GCGAAACCAGCGCCGGAAGATATCATCAGCGAACTGTTTACCGACGCTTC    437
                     ||.||.||.||||||||.||.|..|||||||||||||||||.||.|||||
BL01329___yit    388 GCCAAGCCGGCGCCGGAGGACAAGATCAGCGAACTGTTTACTGAAGCTTC    437

BSNT_01862___    438 AGAAGATCTGATGAATAAAGAGCTGACAGGTACGGTGTACAGGCTGATCG    487
                     |...|..|||||||||||||||||.||.||.|||.|.|||.|..||||||
BL01329___yit    438 ACCCGGCCTGATGAATAAAGAGCTCACCGGGACGATCTACCGCTTGATCG    487

BSNT_01862___    488 CATCGGGTTCATTCGTGATCACGGATGACGGTATCCGCTGTTTTATTCAC    537
                     ||||.||.||.||..||||..|.||.|.|||.|||.|..|.||.||.||.
BL01329___yit    488 CATCAGGCTCTTTTATGATTTCCGAAGCCGGCATCAGAGGCTTCATCCAT    537

BSNT_01862___    538 CCGTCAGAAAGAAAAGAGGAGCCAAGACTGGGTTC-AAAAG-TCACAGGC    585
                     .|.||.||..||||.||.|||||.||.||.||  | ||||| |.||.|..
BL01329___yit    538 TCTTCTGAGCGAAAGGAAGAGCCGAGGCTCGG--CGAAAAGCTGACTGCA    585

BSNT_01862___    586 CGGGTGATTCAAGTGAAAGAAGACGGTTCAGTCAACTTGTCGCTGCTTCC    635
                     .|||||||..||||.||||||||||||||.||.||..|||||||.||.||
BL01329___yit    586 AGGGTGATCAAAGTAAAAGAAGACGGTTCTGTAAATCTGTCGCTTCTGCC    635

BSNT_01862___    636 GAGAAAACAGGATGCAATGTCTGTTGATGCTGAGTGCATTCTAACGTATA    685
                     ||||||.||||||||..||||.||||||||.||....|||||.||.||||
BL01329___yit    636 GAGAAAGCAGGATGCCTTGTCGGTTGATGCGGAACAAATTCTGACTTATA    685

BSNT_01862___    686 TGAGAATGAGAAACGGTGCCATGCCGTACAGTGACAAAAGCCAGCCTGAC    735
                     |||||..|||||||||.||.|||||.|.|.|.||.||||||.|.||.||.
BL01329___yit    686 TGAGATCGAGAAACGGCGCGATGCCATTCTGGGATAAAAGCGATCCAGAG    735

BSNT_01862___    736 GATATCAGAGAACGTTTTAATATGAGCAAAGCCGCCTTTAAACGCGCGCT    785
                     |||||||||||.||.||.||.|||||||||||.||.||||||.|.|||||
BL01329___yit    736 GATATCAGAGAGCGCTTCAACATGAGCAAAGCAGCATTTAAAAGGGCGCT    785

BSNT_01862___    786 GGGCCATTTGATGAAAAACGGA-AAAGTGTATCAGGAAAATGGATGGACA    834
                     .||||||.||||||||.| ||| |||.|.|||||||||.|.||.|||||.
BL01329___yit    786 CGGCCATCTGATGAAACA-GGATAAAATCTATCAGGAAGAGGGTTGGACG    834

BSNT_01862___    835 TACGAGAAAAAATAG    849
                     ||||||||||||||.
BL01329___yit    835 TACGAGAAAAAATAA    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01862 and BL01329

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
