Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01825 and BL01318

See Amino acid alignment / Visit BSNT_01825 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01825___gerPB.1.5803.seq
#    -bsequence dna-align/BL01318___gerPB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01825___gerPB-BL01318___gerPB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01825___gerPB-BL01318___gerPB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01825___gerPB
# 2: BL01318___gerPB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 267
# Identity:     163/267 (61.0%)
# Similarity:   163/267 (61.0%)
# Gaps:          57/267 (21.3%)
# Score: 489.5
# 
#
#=======================================

BSNT_01825___      1 ATGAACTTCTATATTAATCAAACCATTCAAATCAACTATCTCCGGCTGGA     50
                     ||||||||.|||||.||||||||.||.||||||||.|||.|..|..|.||
BL01318___ger      1 ATGAACTTTTATATCAATCAAACAATACAAATCAATTATTTAAGAGTTGA     50

BSNT_01825___     51 ATCAATCAGCAACTCCTCCATTCTGCAAATCGGGAGCGCCGGATCAATCA    100
                     |..||||||||||||.|||.|..||||.||.||.||||||||.|||||||
BL01318___ger     51 AGGAATCAGCAACTCTTCCGTATTGCAGATTGGAAGCGCCGGTTCAATCA    100

BSNT_01825___    101 AGTC-TTTGTCAAATTTGTATAATACAGGAAGCTATGTAGAACCGGCACC    149
                     |..| .||| |.||..||||.|||||.||||||||...||||||.|||||
BL01318___ger    101 AAACACTTG-CCAACCTGTACAATACCGGAAGCTACACAGAACCCGCACC    149

BSNT_01825___    150 ------------AGAAGTTTCTG-----GCTCAGGGCAACCGCTCCAGCT    182
                                 .|||||.|.||     |||...||          ||.|
BL01318___ger    150 TCCGGTAACCGGCGAAGTCTTTGACGACGCTTTTGG----------AGAT    189

BSNT_01825___    183 GCAGGAGC----CCGACACAGGTTCAT-TGGTCCCGCTCCAGCCTCCTGG    227
                     |  ||| |    |||||.|..||||.| |  ||.||||    |||.||  
BL01318___ger    190 G--GGA-CTCAACCGACTCTCGTTCCTCT--TCACGCT----CCTTCT--    228

BSNT_01825___    228 CCGTTAA----------    234
                       ||||.          
BL01318___ger    229 --GTTACAGTACCATAG    243


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