Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01838 and BL01315
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01838___yisN.1.5803.seq
# -bsequence dna-align/BL01315___yisN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01838___yisN-BL01315___yisN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01838___yisN-BL01315___yisN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01838___yisN
# 2: BL01315___yisN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity: 373/615 (60.7%)
# Similarity: 373/615 (60.7%)
# Gaps: 105/615 (17.1%)
# Score: 989.0
#
#
#=======================================
BSNT_01838___ 1 ATG------AAACG---GAAAC-AATTGTTATATACAGAGGAACGAAAAT 40
||| .|||| ||||| |.|| |||.|.||..|.||.||||
BL01315___yis 1 ATGGACACCGAACGCCAGAAACGACTT----TATGCCGAAAAGCGCAAAT 46
BSNT_01838___ 41 GGGAATACGGCACCATCCTCATCGAAGACGGCGTCTGTTTAATCGAAAAC 90
||...|||||||..||..|.||.||||||||..||||..|.||.|||||.
BL01315___yis 47 GGATTTACGGCAAAATTTTAATGGAAGACGGGATCTGCCTGATTGAAAAT 96
BSNT_01838___ 91 GGAGAAGGTGATATACTTTTGGCGGACACTCTCCAACACAGCCCAATCTG 140
|.||||||.|||.|.|||||||..||.| .||...||||||| |.|
BL01315___yis 97 GAAGAAGGAGATTTGCTTTTGGTTGAAA---GCCTGAACAGCCC---CGG 140
BSNT_01838___ 141 GGT-----CCATCATA-AAGGAAAGTGGGAGCAAGCCG----GCTTCCAG 180
.|| .||.|||| |.|||.|.|||.|..|||||| |.||
BL01315___yis 141 AGTTTTCATCAGCATAGACGGAGAATGGCAAAAAGCCGAACTGTTT---- 186
BSNT_01838___ 181 GATCAATTGGTTCTGGCATGCGGTGAAGAAAACATC----TCC------C 220
|||||||| .||.||.|.|.|||.|.| .|| |
BL01315___yis 187 GATCAATT----------CGCCGTAACGGAAAAACCGGAGACCGTGAAGC 226
BSNT_01838___ 221 TTTCCGGGGGAGAACGCATCCGCTATGAGAAATCAGTCAAGCGGCCGCTC 270
|..|.||.|||||||..|||||.|||..||||.|.||.||.|.|.|..||
BL01315___yis 227 TGACAGGAGGAGAACCGATCCGTTATCTGAAAACGGTAAAACAGGCATTC 276
BSNT_01838___ 271 ATGGCGCTTTTG---GATTCGCTTGACGACGAAAC----CT-TTCTCGCA 312
.|.|...||||| ||| ||.||.|||| .|| || ||||
BL01315___yis 277 CTCGAATTTTTGAACGAT---CTGGAAGACG-GACAGTTCTATTCT---- 318
BSNT_01838___ 313 TTTCTGCAGCACTTGCACAGCTTCGGCTTATCGGTATTCGATTGCGTCTT 362
|||.||.|.||..||.|||||.|||||||.||.||.||.||.||||||||
BL01315___yis 319 TTTTTGGATCAGCTGAACAGCCTCGGCTTTTCCGTCTTTGACTGCGTCTT 368
BSNT_01838___ 363 TTCTTATAA-----TAAAGGAGTCTTTTCG-------AATACTTCGGCGG 400
..|.||||| | ||| |||||.| ||.| ||..|
BL01315___yis 369 CGCCTATAACGGCCT----GAG-CTTTTGGCCCGAGAAAAA----GGATG 409
BSNT_01838___ 401 GGCAGGGTGTGTCCTTTTATCACTTTTCAAATGACACCGCACAATGCGCG 450
...||||.||.||.||||||||.|||||..||||.|....|||||||||.
BL01315___yis 410 TCAAGGGCGTTTCGTTTTATCAGTTTTCTCATGATATGAAACAATGCGCC 459
BSNT_01838___ 451 ATGCAGCATCACTAC---AGCAACGAAGGGACAGGA--GACCGTTTTGAA 495
.||||||||||.||| ||.||.|| |||..||| |||.|.||||||
BL01315___yis 460 CTGCAGCATCATTACGAAAGAAAAGA--GGAGTGGAAGGACAGATTTGAA 507
BSNT_01838___ 496 TGGACGGCTTCAAACGGAAAGCGATCCATTATGTATTCAGCAGTCCAACG 545
|||||.||||||.|.||..|.|||..|.|||||..||||.||.||.|
BL01315___yis 508 TGGACCGCTTCAGATGGGGAACGAATCGTTATGATTTCAACATTCAA--- 554
BSNT_01838___ 546 GGGGCGC--AAATAA 558
|.||| |.||||
BL01315___yis 555 --GCCGCCGACATAA 567
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