Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01843 and BL01311
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01843___yisQ.1.5803.seq
# -bsequence dna-align/BL01311___yisQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01843___yisQ-BL01311___yisQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01843___yisQ-BL01311___yisQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01843___yisQ
# 2: BL01311___yisQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1414
# Identity: 1022/1414 (72.3%)
# Similarity: 1022/1414 (72.3%)
# Gaps: 119/1414 ( 8.4%)
# Score: 3669.5
#
#
#=======================================
BSNT_01843___ 1 ATGAAACAAGCTGTCTTCAAATCAACTGCTTTGAAAAAACCCGCTGA--- 47
.||||||||.|.|| |
BL01311___yis 1 ------------------------------ATGAAAAAAACAGC--ACCT 18
BSNT_01843___ 48 CAAAACGTTCTCATTATTTTCGC--TTACTTGGCCGATCTTTATTGAGGT 95
|||||| .||||.||| ||||| |.||||||||.||||||||.|||||
BL01311___yis 19 CAAAAC-CTCTCTTTA--TTCGCATTGACTTGGCCTATCTTTATCGAGGT 65
BSNT_01843___ 96 CTCATTATATATGTTTATGGGTAATGCCGATACACTGATGCTCAGCCAAT 145
.||||||||||||||.|||||.||.||.|||||.||||||||||||||||
BL01311___yis 66 TTCATTATATATGTTAATGGGCAACGCAGATACCCTGATGCTCAGCCAAT 115
BSNT_01843___ 146 ACTCGGATAACAGCGTGGCAGCAGTCGGCGTCAGCAACCAGATTTTAAAT 195
|.||.||..|||||||||||||.|||||||||||||||||.||..|.||.
BL01311___yis 116 ATTCCGACGACAGCGTGGCAGCCGTCGGCGTCAGCAACCAAATGCTGAAC 165
BSNT_01843___ 196 TTAATTATCGTGATGTTCAGCTTTATCGCAACAGGAACGACCGTTATCAT 245
||.||.||.|||||||||.|.|||||||||||||||||.|||||.||.||
BL01311___yis 166 TTGATCATTGTGATGTTCGGTTTTATCGCAACAGGAACAACCGTCATTAT 215
BSNT_01843___ 246 TTCACAATTTCTAGGCTCACGGCAAAAGAAAGAAGCCATGGAAGTCGCTT 295
|||.||||||.||||..|.||||||||....|||||.||||||||||..|
BL01311___yis 216 TTCTCAATTTTTAGGGGCGCGGCAAAAAGCCGAAGCAATGGAAGTCGGCT 265
BSNT_01843___ 296 ATGTGTCAATCGGCGCCAACTTCTTCATCAGCCTGGCCATTAGCGCCATC 345
||||.||.|||.|||||||.||..|||||||.|| ||| ||||
BL01311___yis 266 ATGTTTCCATCAGCGCCAATTTTATCATCAGTCT----ATT-----CATC 306
BSNT_01843___ 346 -GTCTTTTTCGCGGC------------TGTC---CCTCTGCTTCAT--AT 377
|| ||||| ||.| ||.|| ||.|| ||
BL01311___yis 307 AGT-------GCGGCGATTTATATATTTGCCAAACCGCT--TTTATTGAT 347
BSNT_01843___ 378 GATGGGATTATCAGACGCACTGATGCCTGATGC--GAAAGTCTTTTTACA 425
||||||..|.||.|.|...|||.|..||||.|| |.| |||||.|.||
BL01311___yis 348 GATGGGCCTTTCCGCCAACCTGCTTGCTGAAGCCGGCA--TCTTTCTCCA 395
BSNT_01843___ 426 AGTTGTCGGAGGTCTGTCCTTTATTCAGGCTTTAATCATGACATTCAGCG 475
..|.|||||.||.|||||||||.|.||.||..|.||.|||||.|||||||
BL01311___yis 396 GATCGTCGGCGGACTGTCCTTTGTCCAAGCGCTCATTATGACGTTCAGCG 445
BSNT_01843___ 476 CGATCTTAAAAAGCTATGGCTATACAAAAGATACAATGTTTGTCACTATC 525
|.||.||.||||||||.||.||||||||.||.||||||.||||.||.|||
BL01311___yis 446 CCATTTTGAAAAGCTACGGGTATACAAAGGACACAATGGTTGTAACCATC 495
BSNT_01843___ 526 GGCATGAACATTTTAAACATTGCCGGAAACTTTGTTGTGATTTTTGGTTT 575
||||||||.||..|.|||||.|||||.||||.|.||||.||.||.||...
BL01311___yis 496 GGCATGAATATCCTGAACATCGCCGGCAACTATCTTGTCATATTCGGACC 545
BSNT_01843___ 576 GTTCGGCTTTCCTGTTCTCGGCGTTGCCGGTGTGGCCATGTCCACATCTA 625
||||||||||||.|||.|.|||||.|||||.|||||.||||||||.||.|
BL01311___yis 546 GTTCGGCTTTCCGGTTTTAGGCGTGGCCGGCGTGGCAATGTCCACTTCAA 595
BSNT_01843___ 626 TCGCCCGCGTCATCGGATTAATCGCGATGATTGTGATTGTCAACAAACGC 675
||||.|||.|||||||..|..|.|||||...|.||.|.|||||.||.|||
BL01311___yis 596 TCGCGCGCATCATCGGCCTTTTGGCGATCGCTCTGCTCGTCAAAAAGCGC 645
BSNT_01843___ 676 ATTCAGCTGAAGATGTCGCTG----AAAAAAGTCT-TTCATATG-CATAA 719
.||.|| |||.||||| ..|||.|.|| || || |.|||
BL01311___yis 646 -GTCGGC-----ATGCCGCTGTTGTCCAAACGGCTGTT----TGTCTTAA 685
BSNT_01843___ 720 AGAA----CATTTGCGCAAGCTGCTGAAAATCGGCATTCCTTCTGCGGGA 765
|||| ||..||...||.||||||||||||||.||||||||.||.||.
BL01311___yis 686 AGAAAAGTCACCTGAAAAAACTGCTGAAAATCGGGATTCCTTCAGCAGGG 735
BSNT_01843___ 766 GAGCAGCTTTCATACAACCTTTCGCAAATGATTGTCACGTATTTTATCGC 815
||||||||.|||||.|||...||.||.|||||||||||.|||||||||.|
BL01311___yis 736 GAGCAGCTGTCATATAACGCGTCACAGATGATTGTCACCTATTTTATCAC 785
BSNT_01843___ 816 GATCATGGGCGCGCAGGCGTTGACAACAAAAGTGTATACGCAAAATATTA 865
|.|.|||||||||||||||.|||||||||||||.|||||.||||||.|.|
BL01311___yis 786 GCTGATGGGCGCGCAGGCGCTGACAACAAAAGTCTATACCCAAAATTTGA 835
BSNT_01843___ 866 CGATGTTTATTTTGCTGTTCGGCACTGCGATCAGCCAGGGTACACAAATC 915
.|||||||||..||||.||||||||.||||||||||||||.||.||||||
BL01311___yis 836 TGATGTTTATCATGCTTTTCGGCACAGCGATCAGCCAGGGAACGCAAATC 885
BSNT_01843___ 916 TTAATCGGCCGTTATATCGGCGGCAAACAATTTGATGCCGCTTATGAG-C 964
||||||||.||..|||||||||..||.||||||||||..||.|| .|| |
BL01311___yis 886 TTAATCGGACGCCATATCGGCGCGAAGCAATTTGATGAAGCATA-CAGCC 934
BSNT_01843___ 965 GCTGCATGAAGAGCTTATATTGGGCACTCGGAATTGCTGCGGCTACCTCT 1014
|||||.||||.|||.|.|..|||||.||.|..|||.|..|...|||.||.
BL01311___yis 935 GCTGCCTGAAAAGCCTGTGGTGGGCTCTGGCCATTACAACATTTACTTCC 984
BSNT_01843___ 1015 GT----TTTGATGACGATCTTTTCAAAAGACCTGATCGGACTCTTCA-CA 1059
|| ||.|.|| |.|||||||||.|.||||||||..|.|||| ||
BL01311___yis 985 GTTCTCTTCGCTG----TGTTTTCAAAACAGCTGATCGGCATTTTCAGCA 1030
BSNT_01843___ 1060 CAAAGCCCTGACATTATAGCAACTGCAAGCCTATTGATTGCC--ATGACC 1107
..||.||| ||.|||||.|||||.||.||..||.|||| || .||||.
BL01311___yis 1031 GCAATCCC-GATATTATCGCAACGGCCAGTATACTGAT--CCTTTTGACG 1077
BSNT_01843___ 1108 ATTATCCTTGAACCAGGCCGCTCGTTTAATGTCATTATCATTAACTCTCT 1157
||||||.|.||.||.||||||||||||||.||..|.||||||||.|||||
BL01311___yis 1078 ATTATCTTGGAGCCCGGCCGCTCGTTTAACGTGGTCATCATTAATTCTCT 1127
BSNT_01843___ 1158 GCGGGCCGCGGGGGATGCGAAATTCCCGGTTTACATGGCGATGATTTCAA 1207
..|.||.|||||.||.|||||||..||||||||.||||||||..|.||.|
BL01311___yis 1128 CAGAGCTGCGGGAGACGCGAAATATCCGGTTTATATGGCGATTGTCTCGA 1177
BSNT_01843___ 1208 TGTGGGGCATTGGCCTCCCGCTTGCTTATCTTTTTGGCATCCACCTCGGT 1257
|||||||.||.||.||.|||.|.|||||..||||.|||||.||.|||||.
BL01311___yis 1178 TGTGGGGAATCGGACTTCCGATCGCTTACATTTTCGGCATTCAGCTCGGA 1227
BSNT_01843___ 1258 TTCGGTCTTGCCGGTATTTGGATTTCTTTTATCGCGGATGAATGGGTCCG 1307
|||||.||.||.||.||||||.||||.||.|||||.||.|||||||||.|
BL01311___yis 1228 TTCGGCCTGGCGGGAATTTGGTTTTCCTTCATCGCCGACGAATGGGTCAG 1277
BSNT_01843___ 1308 GGGAATCTTAATGTACAGAAGATGGCGCTCACGTATCTGGATTCAAAAAG 1357
||||||.||||||||||||||||||.|.||....||.|||.|||||||||
BL01311___yis 1278 GGGAATTTTAATGTACAGAAGATGGAGATCTAAAATGTGGCTTCAAAAAG 1327
BSNT_01843___ 1358 G-TATG--GCGTAA 1368
| |.|| ||.|||
BL01311___yis 1328 GATTTGCAGCATAA 1341
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