Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01843 and BL01311

See Amino acid alignment / Visit BSNT_01843 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_01843___yisQ.1.5803.seq
#    -bsequence dna-align/BL01311___yisQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01843___yisQ-BL01311___yisQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01843___yisQ-BL01311___yisQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01843___yisQ
# 2: BL01311___yisQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1414
# Identity:    1022/1414 (72.3%)
# Similarity:  1022/1414 (72.3%)
# Gaps:         119/1414 ( 8.4%)
# Score: 3669.5
# 
#
#=======================================

BSNT_01843___      1 ATGAAACAAGCTGTCTTCAAATCAACTGCTTTGAAAAAACCCGCTGA---     47
                                                   .||||||||.|.||  |   
BL01311___yis      1 ------------------------------ATGAAAAAAACAGC--ACCT     18

BSNT_01843___     48 CAAAACGTTCTCATTATTTTCGC--TTACTTGGCCGATCTTTATTGAGGT     95
                     |||||| .||||.|||  |||||  |.||||||||.||||||||.|||||
BL01311___yis     19 CAAAAC-CTCTCTTTA--TTCGCATTGACTTGGCCTATCTTTATCGAGGT     65

BSNT_01843___     96 CTCATTATATATGTTTATGGGTAATGCCGATACACTGATGCTCAGCCAAT    145
                     .||||||||||||||.|||||.||.||.|||||.||||||||||||||||
BL01311___yis     66 TTCATTATATATGTTAATGGGCAACGCAGATACCCTGATGCTCAGCCAAT    115

BSNT_01843___    146 ACTCGGATAACAGCGTGGCAGCAGTCGGCGTCAGCAACCAGATTTTAAAT    195
                     |.||.||..|||||||||||||.|||||||||||||||||.||..|.||.
BL01311___yis    116 ATTCCGACGACAGCGTGGCAGCCGTCGGCGTCAGCAACCAAATGCTGAAC    165

BSNT_01843___    196 TTAATTATCGTGATGTTCAGCTTTATCGCAACAGGAACGACCGTTATCAT    245
                     ||.||.||.|||||||||.|.|||||||||||||||||.|||||.||.||
BL01311___yis    166 TTGATCATTGTGATGTTCGGTTTTATCGCAACAGGAACAACCGTCATTAT    215

BSNT_01843___    246 TTCACAATTTCTAGGCTCACGGCAAAAGAAAGAAGCCATGGAAGTCGCTT    295
                     |||.||||||.||||..|.||||||||....|||||.||||||||||..|
BL01311___yis    216 TTCTCAATTTTTAGGGGCGCGGCAAAAAGCCGAAGCAATGGAAGTCGGCT    265

BSNT_01843___    296 ATGTGTCAATCGGCGCCAACTTCTTCATCAGCCTGGCCATTAGCGCCATC    345
                     ||||.||.|||.|||||||.||..|||||||.||    |||     ||||
BL01311___yis    266 ATGTTTCCATCAGCGCCAATTTTATCATCAGTCT----ATT-----CATC    306

BSNT_01843___    346 -GTCTTTTTCGCGGC------------TGTC---CCTCTGCTTCAT--AT    377
                      ||       |||||            ||.|   ||.||  ||.||  ||
BL01311___yis    307 AGT-------GCGGCGATTTATATATTTGCCAAACCGCT--TTTATTGAT    347

BSNT_01843___    378 GATGGGATTATCAGACGCACTGATGCCTGATGC--GAAAGTCTTTTTACA    425
                     ||||||..|.||.|.|...|||.|..||||.||  |.|  |||||.|.||
BL01311___yis    348 GATGGGCCTTTCCGCCAACCTGCTTGCTGAAGCCGGCA--TCTTTCTCCA    395

BSNT_01843___    426 AGTTGTCGGAGGTCTGTCCTTTATTCAGGCTTTAATCATGACATTCAGCG    475
                     ..|.|||||.||.|||||||||.|.||.||..|.||.|||||.|||||||
BL01311___yis    396 GATCGTCGGCGGACTGTCCTTTGTCCAAGCGCTCATTATGACGTTCAGCG    445

BSNT_01843___    476 CGATCTTAAAAAGCTATGGCTATACAAAAGATACAATGTTTGTCACTATC    525
                     |.||.||.||||||||.||.||||||||.||.||||||.||||.||.|||
BL01311___yis    446 CCATTTTGAAAAGCTACGGGTATACAAAGGACACAATGGTTGTAACCATC    495

BSNT_01843___    526 GGCATGAACATTTTAAACATTGCCGGAAACTTTGTTGTGATTTTTGGTTT    575
                     ||||||||.||..|.|||||.|||||.||||.|.||||.||.||.||...
BL01311___yis    496 GGCATGAATATCCTGAACATCGCCGGCAACTATCTTGTCATATTCGGACC    545

BSNT_01843___    576 GTTCGGCTTTCCTGTTCTCGGCGTTGCCGGTGTGGCCATGTCCACATCTA    625
                     ||||||||||||.|||.|.|||||.|||||.|||||.||||||||.||.|
BL01311___yis    546 GTTCGGCTTTCCGGTTTTAGGCGTGGCCGGCGTGGCAATGTCCACTTCAA    595

BSNT_01843___    626 TCGCCCGCGTCATCGGATTAATCGCGATGATTGTGATTGTCAACAAACGC    675
                     ||||.|||.|||||||..|..|.|||||...|.||.|.|||||.||.|||
BL01311___yis    596 TCGCGCGCATCATCGGCCTTTTGGCGATCGCTCTGCTCGTCAAAAAGCGC    645

BSNT_01843___    676 ATTCAGCTGAAGATGTCGCTG----AAAAAAGTCT-TTCATATG-CATAA    719
                      .||.||     |||.|||||    ..|||.|.|| ||    || |.|||
BL01311___yis    646 -GTCGGC-----ATGCCGCTGTTGTCCAAACGGCTGTT----TGTCTTAA    685

BSNT_01843___    720 AGAA----CATTTGCGCAAGCTGCTGAAAATCGGCATTCCTTCTGCGGGA    765
                     ||||    ||..||...||.||||||||||||||.||||||||.||.||.
BL01311___yis    686 AGAAAAGTCACCTGAAAAAACTGCTGAAAATCGGGATTCCTTCAGCAGGG    735

BSNT_01843___    766 GAGCAGCTTTCATACAACCTTTCGCAAATGATTGTCACGTATTTTATCGC    815
                     ||||||||.|||||.|||...||.||.|||||||||||.|||||||||.|
BL01311___yis    736 GAGCAGCTGTCATATAACGCGTCACAGATGATTGTCACCTATTTTATCAC    785

BSNT_01843___    816 GATCATGGGCGCGCAGGCGTTGACAACAAAAGTGTATACGCAAAATATTA    865
                     |.|.|||||||||||||||.|||||||||||||.|||||.||||||.|.|
BL01311___yis    786 GCTGATGGGCGCGCAGGCGCTGACAACAAAAGTCTATACCCAAAATTTGA    835

BSNT_01843___    866 CGATGTTTATTTTGCTGTTCGGCACTGCGATCAGCCAGGGTACACAAATC    915
                     .|||||||||..||||.||||||||.||||||||||||||.||.||||||
BL01311___yis    836 TGATGTTTATCATGCTTTTCGGCACAGCGATCAGCCAGGGAACGCAAATC    885

BSNT_01843___    916 TTAATCGGCCGTTATATCGGCGGCAAACAATTTGATGCCGCTTATGAG-C    964
                     ||||||||.||..|||||||||..||.||||||||||..||.|| .|| |
BL01311___yis    886 TTAATCGGACGCCATATCGGCGCGAAGCAATTTGATGAAGCATA-CAGCC    934

BSNT_01843___    965 GCTGCATGAAGAGCTTATATTGGGCACTCGGAATTGCTGCGGCTACCTCT   1014
                     |||||.||||.|||.|.|..|||||.||.|..|||.|..|...|||.||.
BL01311___yis    935 GCTGCCTGAAAAGCCTGTGGTGGGCTCTGGCCATTACAACATTTACTTCC    984

BSNT_01843___   1015 GT----TTTGATGACGATCTTTTCAAAAGACCTGATCGGACTCTTCA-CA   1059
                     ||    ||.|.||    |.|||||||||.|.||||||||..|.|||| ||
BL01311___yis    985 GTTCTCTTCGCTG----TGTTTTCAAAACAGCTGATCGGCATTTTCAGCA   1030

BSNT_01843___   1060 CAAAGCCCTGACATTATAGCAACTGCAAGCCTATTGATTGCC--ATGACC   1107
                     ..||.||| ||.|||||.|||||.||.||..||.||||  ||  .||||.
BL01311___yis   1031 GCAATCCC-GATATTATCGCAACGGCCAGTATACTGAT--CCTTTTGACG   1077

BSNT_01843___   1108 ATTATCCTTGAACCAGGCCGCTCGTTTAATGTCATTATCATTAACTCTCT   1157
                     ||||||.|.||.||.||||||||||||||.||..|.||||||||.|||||
BL01311___yis   1078 ATTATCTTGGAGCCCGGCCGCTCGTTTAACGTGGTCATCATTAATTCTCT   1127

BSNT_01843___   1158 GCGGGCCGCGGGGGATGCGAAATTCCCGGTTTACATGGCGATGATTTCAA   1207
                     ..|.||.|||||.||.|||||||..||||||||.||||||||..|.||.|
BL01311___yis   1128 CAGAGCTGCGGGAGACGCGAAATATCCGGTTTATATGGCGATTGTCTCGA   1177

BSNT_01843___   1208 TGTGGGGCATTGGCCTCCCGCTTGCTTATCTTTTTGGCATCCACCTCGGT   1257
                     |||||||.||.||.||.|||.|.|||||..||||.|||||.||.|||||.
BL01311___yis   1178 TGTGGGGAATCGGACTTCCGATCGCTTACATTTTCGGCATTCAGCTCGGA   1227

BSNT_01843___   1258 TTCGGTCTTGCCGGTATTTGGATTTCTTTTATCGCGGATGAATGGGTCCG   1307
                     |||||.||.||.||.||||||.||||.||.|||||.||.|||||||||.|
BL01311___yis   1228 TTCGGCCTGGCGGGAATTTGGTTTTCCTTCATCGCCGACGAATGGGTCAG   1277

BSNT_01843___   1308 GGGAATCTTAATGTACAGAAGATGGCGCTCACGTATCTGGATTCAAAAAG   1357
                     ||||||.||||||||||||||||||.|.||....||.|||.|||||||||
BL01311___yis   1278 GGGAATTTTAATGTACAGAAGATGGAGATCTAAAATGTGGCTTCAAAAAG   1327

BSNT_01843___   1358 G-TATG--GCGTAA   1368
                     | |.||  ||.|||
BL01311___yis   1328 GATTTGCAGCATAA   1341


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