Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01860 and BL01307
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01860___yitJ.1.5803.seq
# -bsequence dna-align/BL01307___yitJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01860___yitJ-BL01307___yitJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01860___yitJ-BL01307___yitJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01860___yitJ
# 2: BL01307___yitJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1881
# Identity: 1379/1881 (73.3%)
# Similarity: 1379/1881 (73.3%)
# Gaps: 93/1881 ( 4.9%)
# Score: 4889.5
#
#
#=======================================
BSNT_01860___ 1 ATGGGACTTTTAGAAGATTT-----GCAAAGACAGGTGTTAATCGGTGAC 45
|||||..||||.||.|||.| .|||| || ||||||||.||||
BL01307___yit 1 ATGGGTTTTTTGGAGGATATAAAAAACAAA-AC----GTTAATCGCTGAC 45
BSNT_01860___ 46 GGCGCCATGGGGACGCTCCTCTACTCCTATGGCATTGACAGGTGTTTTGA 95
|||||.|||||.|||||.||.||.||||||||.||.||||||||||||||
BL01307___yit 46 GGCGCAATGGGCACGCTTCTGTATTCCTATGGGATCGACAGGTGTTTTGA 95
BSNT_01860___ 96 GGAACTCAATATTTCAAAGCCGGAGGAAATTCAG-CGCATACATAAAGCG 144
||||||.||.||.||.|||||.||.|||| |.|| |||.|.||..|||||
BL01307___yit 96 GGAACTGAACATCTCCAAGCCCGAAGAAA-TAAGACGCGTCCACGAAGCG 144
BSNT_01860___ 145 TATGTTGAAGCGGGAGCCAACATTATTCAAACGAATACGTACGGGGCCAA 194
|||||..|.||.||.|||.||||||||||||||||.||||||||.||.||
BL01307___yit 145 TATGTACAGGCCGGCGCCGACATTATTCAAACGAACACGTACGGCGCAAA 194
BSNT_01860___ 195 CTATATTAAATTATCCAGACACGGTCTTGAGGATGACATCAAAA-AAATG 243
||..||.||..|.||||||.||||.||.||.||.|| |.||||| ||||.
BL01307___yit 195 CTTCATCAAGCTGTCCAGATACGGACTCGAAGACGA-AACAAAACAAATC 243
BSNT_01860___ 244 AATCAGGAGGCCGTAAAGATTGCGCGGGCTTCAGCAGGCGATGCATACGT 293
||..|..|.|||||.....|.||.||.||..|.||.|||...||.||.||
BL01307___yit 244 AACGAAAAAGCCGTCCGCCTCGCCCGCGCCGCCGCCGGCTCCGCTTATGT 293
BSNT_01860___ 294 GCTTGGAACGATGGGCGGCATACGGACATTTAATAAAAACGCGTACAGTC 343
.||.||.|||.|.|||||.||.|||||.||.||.||||||.||||...||
BL01307___yit 294 TCTCGGTACGCTCGGCGGAATCCGGACGTTCAACAAAAACTCGTATTCTC 343
BSNT_01860___ 344 TTGACGAAATTAAGCGCAGCTTCCGCGAGCAGTTGTATCTGCTGCTGCAT 393
|.||.||.|||||..|.|||||||||||.|||.|.||.||.|||.|..||
BL01307___yit 344 TCGAGGACATTAAAAGAAGCTTCCGCGAACAGCTCTACCTTCTGTTAAAT 393
BSNT_01860___ 394 GAAGAGCCGGATGG-CTTGCTGTTAGAAACATATTATGATTTGGAAGAAG 442
||..|||||||.|| ||| |||.|.|||||.|||||.||.||.|||||||
BL01307___yit 394 GAGCAGCCGGACGGACTT-CTGCTCGAAACCTATTACGACTTAGAAGAAG 442
BSNT_01860___ 443 CCCGTGAAGTGCTGAAAATCGCGCGCAAAGAGACTGATCTTCCGATTATG 492
|.||.|||||..|.||.||.||..|.||.||.||.||.||.|||||.||.
BL01307___yit 443 CGCGCGAAGTTTTAAAGATTGCCAGAAAGGAAACGGAGCTGCCGATCATT 492
BSNT_01860___ 493 CTCAATGTCTCCATGCACGAGCAAGGCGTATTGCAGGACGGAACACCGCT 542
.|.||||||||.||||||||..|.|||||..|.||||||||.||.|||||
BL01307___yit 493 TTGAATGTCTCGATGCACGAAGAGGGCGTTCTTCAGGACGGCACCCCGCT 542
BSNT_01860___ 543 T--------TCTGACGCA--TTGCGATCGATTGCGGATCTCGGGGCTGAT 582
| |||||.||| |.|| ||| .|||||.||.|||
BL01307___yit 543 TGCGGACGGTCTGAAGCAGCTGGC-ATC---------ACTCGGCGCAGAT 582
BSNT_01860___ 583 ATCGTCGGCATTAACTGCCGGCTCGGGCCTTATCACATGATTGAAGCGCT 632
.||||||||||.||||||||.|||||.||||||||.|||||...||||||
BL01307___yit 583 GTCGTCGGCATCAACTGCCGTCTCGGCCCTTATCATATGATCAGAGCGCT 632
BSNT_01860___ 633 CAGCGAAGTGCCGATTTTTGATGA--CGTATTCTTATCCGTTTATCCGAA 680
....|||||.|||.||||.||.|| |.|| |||| |||||.||||||||
BL01307___yit 633 TGAAGAAGTCCCGCTTTTAGAAGATGCCTA-TCTT-TCCGTCTATCCGAA 680
BSNT_01860___ 681 CAGCAGTCTTCCTTCGCTTGAAGAGGGACGGCTCGTCTATGAAACAGACG 730
||||||.||.||.||.||||..||.||..||||.||.|||||.||.||.|
BL01307___yit 681 CAGCAGCCTCCCGTCCCTTGTCGAAGGCAGGCTTGTTTATGAGACGGATG 730
BSNT_01860___ 731 ACACGTAT-TTTCA---AAACAGCGCGTCAGAATTCCGAAAGCAAGGCGC 776
|.|.|| ||||| || ||||||...||||||||.||.||||||||
BL01307___yit 731 --ATGAATATTTCAGGGAA--AGCGCGGAGGAATTCCGCAATCAAGGCGC 776
BSNT_01860___ 777 GCGGATTATCGGCGGCTGCTGCGGCACAACGCCGAATCACATCAGGGCGA 826
.|||||.|||||||||||||||||.||.||||||||.||||||||.||||
BL01307___yit 777 ACGGATCATCGGCGGCTGCTGCGGAACGACGCCGAACCACATCAGAGCGA 826
BSNT_01860___ 827 TGGCGGAAGCAGTTGGCGGGCTGGTTCCGATTAAGGAAAAAGAAGTCAAA 876
||||.||.||.||....||.||...|||..|.|..||||||..|||.|||
BL01307___yit 827 TGGCTGAGGCCGTCAAAGGACTTCCTCCAGTCACCGAAAAACGAGTGAAA 876
BSNT_01860___ 877 ACCCGGGCCAAAGAATTC----ATTTCTGTTCATCACGAGCGAACCGAGC 922
|.|.| ||||||..| .||.|.|||||..||||..|.||.||||
BL01307___yit 877 ATCAG----AAAGAAAGCGGCGCTTGCCGTTCAAAACGAAAGGACAGAGC 922
BSNT_01860___ 923 CCGGCCTGGATGAGATCGCAGCGAAAAAACGCTCTATTATCGTAGAGCTG 972
|.|..||.||.||..|.|||..|.|.|||||.||.||||||||.|||||.
BL01307___yit 923 CTGCTCTTGACGATCTGGCAAAGCAGAAACGGTCCATTATCGTCGAGCTC 972
BSNT_01860___ 973 GATCCGCCGAAAAAACTGAGCTTTGACAAATTTCTGTCCGCTGCTGCTGA 1022
|||||.||.|||.||.|.|.||||||.||||||.||..|||.||.|..||
BL01307___yit 973 GATCCTCCAAAACAATTAAACTTTGAGAAATTTTTGCACGCCGCAGAGGA 1022
BSNT_01860___ 1023 ATTAAAAGAAGCGGGAATCGATGCCCTGACACTCGCCGACAATTCTCTGG 1072
..|||||..|||.|||||||||||.||||||.|.||.|||||.||.||.|
BL01307___yit 1023 GCTAAAATCAGCCGGAATCGATGCACTGACATTGGCGGACAACTCCCTTG 1072
BSNT_01860___ 1073 CGACCCCGCGGATCAGCAATGTTGCCTGCGGCGCTCTCATCAAGCAACAG 1122
|.||.|||.|||||||||||||.||||||||.||.|||.|.||.||.|..
BL01307___yit 1073 CCACACCGAGGATCAGCAATGTCGCCTGCGGGGCGCTCTTAAAACAGCGC 1122
BSNT_01860___ 1123 CTCGATATGCGTTCCCTTGTCCATATTACGTGCCGTGACCGTAACATTAT 1172
|||||||||.|.||.||..|.|||||.||.|||.|.|||||.|||.|.||
BL01307___yit 1123 CTCGATATGAGGTCGCTGATTCATATCACATGCAGAGACCGCAACCTGAT 1172
BSNT_01860___ 1173 CGGCTTACAGTCACATTTAATGGGCCTTGATACGTTAGGGCTGAATGACG 1222
||||.|.|||||.|||||||||||.||.||||||.|.||||||...||||
BL01307___yit 1173 CGGCCTGCAGTCCCATTTAATGGGACTCGATACGCTGGGGCTGTCAGACG 1222
BSNT_01860___ 1223 TGCTTGCTATTACAGGTGACCCTTCTAAAATCGGGGATTTTCCTGGTGCG 1272
||||.||.|||||.||.||.||.||.||||||||.||.|||||.||.|||
BL01307___yit 1223 TGCTGGCGATTACCGGCGATCCGTCGAAAATCGGCGACTTTCCGGGAGCG 1272
BSNT_01860___ 1273 ACGTCTGTATATGATTTAACATCTTTTGATTTAATCAGGCTGATCAAACA 1322
||.||.||.|||||..|.|||||.||.|||||.|||||.||||||||.||
BL01307___yit 1273 ACTTCCGTCTATGACCTGACATCGTTCGATTTGATCAGCCTGATCAAGCA 1322
BSNT_01860___ 1323 ATTCAATGAAGGTCTGTCTCT-GTCTGGAAAACCGCTCGGCAAGAAAACG 1371
.||.||.|||||..|||| || .||.||.|||||||||||||||||||||
BL01307___yit 1323 GTTTAACGAAGGCTTGTC-CTATTCGGGTAAACCGCTCGGCAAGAAAACG 1371
BSNT_01860___ 1372 AATTTCTCAGTTGCCGCCGCATTTAATCCTAACGTCCGCCATCTGGATAA 1421
|||||||||||.||.|||||.||.|||||.||.|||.|.||..|.||.||
BL01307___yit 1372 AATTTCTCAGTGGCGGCCGCCTTCAATCCGAATGTCAGACACATTGACAA 1421
BSNT_01860___ 1422 AGCGGTAAAACGGCTTGAGAAAAAAATAGATTGCGGCGCAGATTATTTTG 1471
||||||.||||||||||||||||||||.|..|||||||||||.|||||..
BL01307___yit 1422 AGCGGTGAAACGGCTTGAGAAAAAAATCGCCTGCGGCGCAGACTATTTCA 1471
BSNT_01860___ 1472 TTTCTCAGCCTGTCTATTCCGAGCAGCAGCTTGTCGATATCCATAACGAA 1521
||||.||||||||||||||||||.|||||||..|..|.|||||.||.|||
BL01307___yit 1472 TTTCCCAGCCTGTCTATTCCGAGGAGCAGCTCATTAAAATCCACAAGGAA 1521
BSNT_01860___ 1522 ATAAAACATC-TGAAGACGCCGATCTATATCGGCATCATGCCGCTGACAA 1570
|.....|||| |||| ||.|||||||||||||||.||||||||||.||.|
BL01307___yit 1522 ACGCGGCATCTTGAA-ACACCGATCTATATCGGCGTCATGCCGCTCACCA 1570
BSNT_01860___ 1571 GCAGCCGGAATGCCGAATTCATCCATAATGAAATTCCCGGCATTAAGCTG 1620
|||||||.||.||.|||||||||||.||.|||||.||||||||.||||||
BL01307___yit 1571 GCAGCCGCAACGCGGAATTCATCCACAACGAAATCCCCGGCATCAAGCTG 1620
BSNT_01860___ 1621 TCTGATACGATTCGCGAAAAAATGGCCCGTGCCGGTGAAGATAAAGAAAA 1670
||||||.|.||.||||||||.|||||.|..||.||..|.||.|||.|||
BL01307___yit 1621 TCTGATTCAATCCGCGAAAAGATGGCGCTGGCAGGAAACGACAAACAAA- 1669
BSNT_01860___ 1671 GCAAAAGGC---GGAAGGCCTTGCGATTGCACGCTCCCTGCTGGATACGG 1717
||.|||| ||||||.||.|||||.||.|||||.|||||.|||.|||
BL01307___yit 1670 --AACAGGCCGAGGAAGGGCTCGCGATCGCTCGCTCTCTGCTTGATGCGG 1717
BSNT_01860___ 1718 CATGCGAGCTGTTTAACGGCATCTACTTGATAACGCC---TTTCC--TCA 1762
|.|||||.|||||.||||||||.||..||||.||.|| |||.| ||.
BL01307___yit 1718 CGTGCGACCTGTTCAACGGCATTTATCTGATCACACCGTTTTTGCGGTCC 1767
BSNT_01860___ 1763 GATCTGACTTAACCGCTGAGCTTACTTCATATATTCAGCAAAAAGATGAG 1812
|||| |||||||.|||||.||..|||||||.||.||.|||||..||
BL01307___yit 1768 GATC-----TAACCGCCGAGCTGACGGCATATATCCATCAGAAAGAAAAG 1812
BSNT_01860___ 1813 CAGCGCCA----AAATATCTTTTTGCATTAA 1839
.|| | ||||.|| |||
BL01307___yit 1813 GAG----AAGACAAATGTC---------TAA 1830
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