Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01861 and BL01306
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01861___yitK.1.5803.seq
# -bsequence dna-align/BL01306___yitK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01861___yitK-BL01306___yitK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01861___yitK-BL01306___yitK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01861___yitK
# 2: BL01306___yitK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 495
# Identity: 390/495 (78.8%)
# Similarity: 390/495 (78.8%)
# Gaps: 6/495 ( 1.2%)
# Score: 1513.0
#
#
#=======================================
BSNT_01861___ 1 ATGGCAAAAGAAAGCTCATTTGATATTGTATCCAAGGTGGAATTGCCTGA 50
|||||.||||||||||||||||||||.||.||.|||||.|||.|||||||
BL01306___yit 1 ATGGCGAAAGAAAGCTCATTTGATATCGTCTCAAAGGTTGAACTGCCTGA 50
BSNT_01861___ 51 AGTGCAAAACGCAATCCAAATCGCACTGAAGGAAATCAGTACCCGATATG 100
|||.||||||||||||||.|.|||.||.|||||||||.|.||.||.||||
BL01306___yit 51 AGTTCAAAACGCAATCCAGACCGCTCTCAAGGAAATCGGCACACGCTATG 100
BSNT_01861___ 101 ACTTTAAAGG--CAGCAAAAGCGACATTTCTTTAGATAAAGAGGAGCTGG 148
|.||.||||| || ||||||..|||..|..|.||...|||.||.||.|
BL01306___yit 101 ATTTCAAAGGGTCA--AAAAGCAGCATCACACTCGAAGGAGACGAACTCG 148
BSNT_01861___ 149 TCCTCGTTTCCGATGACGAATTCAAATTAAGCCAGCTGAAAGATGTGCTG 198
|.|||||.||.||.||||||||.|||.|.|.||||.|||||||.||.||.
BL01306___yit 149 TTCTCGTATCAGACGACGAATTTAAAATGAACCAGTTGAAAGACGTACTT 198
BSNT_01861___ 199 GTCAGCAAATTGATTAAACGAAACGTACCGACAAAAAACATTGAGTACGG 248
|||.|||||.||||.||.||.|||||.|||||.||||||||.||.|||..
BL01306___yit 199 GTCGGCAAACTGATCAAGCGGAACGTCCCGACGAAAAACATCGAATACTC 248
BSNT_01861___ 249 CAAGGTTGAAAACGCGTCAGGCGGAACGGTGCGCCAGCGCGCAAAGCTTG 298
.|||.||||.|||||.||||||||.|||||..|.|||||||.|||..|.|
BL01306___yit 249 AAAGCTTGAGAACGCTTCAGGCGGCACGGTCAGACAGCGCGGAAAATTAG 298
BSNT_01861___ 299 TTCAAGGCATTGACAAGGACAACGCAAAAAAAATCAATACGATCATCAAA 348
||||||||||.|||||.||.|||||||||||||||||||...|.||.|||
BL01306___yit 299 TTCAAGGCATCGACAAAGAAAACGCAAAAAAAATCAATAACCTTATAAAA 348
BSNT_01861___ 349 AACTCCGGACTGAAAGTAAAGTCTCAGGTGCAGGATGATCAAGTGCGTGT 398
||.||.||.||||||||.||.||.||.||||||||.||||||||.||.||
BL01306___yit 349 AAATCGGGTCTGAAAGTTAAATCGCAAGTGCAGGACGATCAAGTCCGCGT 398
BSNT_01861___ 399 CACCGGAAAAAACAAAGATGACCTGCAGCAGATTATCTCAGCT-GTGCGG 447
.|||||||||||.|||||.|||||.|||||.||.|||.| |.| |||.||
BL01306___yit 399 AACCGGAAAAAATAAAGACGACCTTCAGCAAATCATCGC-GATGGTGAGG 447
BSNT_01861___ 448 GGAGCAGATCTGCCAATTGACGTTCAATTTATAAATTTCAGATAA 492
|.|||.||.|||||.|||||.|||||||||||||||||..|||||
BL01306___yit 448 GAAGCCGACCTGCCGATTGATGTTCAATTTATAAATTTTCGATAA 492
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