Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03121 and BL01301
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_03121___yocC.1.5803.seq
# -bsequence dna-align/BL01301.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03121___yocC-BL01301.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03121___yocC-BL01301.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03121___yocC
# 2: BL01301
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 532
# Identity: 365/532 (68.6%)
# Similarity: 365/532 (68.6%)
# Gaps: 56/532 (10.5%)
# Score: 1229.5
#
#
#=======================================
BSNT_03121___ 1 TTGTTTACTATTAAAGAA----AAAAATCGTCAAGA--------GCTTGA 38
.||.|.||...|.||||| ||| |||| |||||.
BL01301 1 ATGATAACGGATGAAGAACTGCAAA-------AAGACAGCTCCGGCTTGC 43
BSNT_03121___ 39 AGAA-GAACTAAATGATTTAGAATTTCAAATTTATCGCATGCAGGAGAAT 87
|||| |||.|.||.||..|..||||||||.|.|.|||.||||..||.|||
BL01301 44 AGAAGGAATTGAACGACCTGCAATTTCAACTGTTTCGGATGCGTGAAAAT 93
BSNT_03121___ 88 ATGAAGGATTTGTCTAAAGATGCCAAAGTGCTTGGTATTGATCAATCGAA 137
|||||||||.|.||.||||||.|...||||||.|||||||||||||||||
BL01301 94 ATGAAGGATATCTCCAAAGATTCGCGAGTGCTCGGTATTGATCAATCGAA 143
BSNT_03121___ 138 ACATGATGAGTGGATGATTGTTTCC--TCGATTGATGATGGCCAAACATG 185
|.|.|||||.|||||||||| ||| ||||||||||||||||..|||||
BL01301 144 AGACGATGAATGGATGATTG--TCCATTCGATTGATGATGGCCGGACATG 191
BSNT_03121___ 186 CAAAATTATGCTAACTGATTGTAAAACGGCTTACCGAGGAAAAGGCTG-- 233
|||.||.|||.|||..|||||..|..||.|.|||||.||.| |.||
BL01301 192 CAAGATCATGTTAAGCGATTGCCAGTCGCCGTACCGCGGGA---GGTGTG 238
BSNT_03121___ 234 -TTTTTCACTTGTAGCGTCTTACAAGGACGA------TGCCATTCATATA 276
||||||.||.||.||.||.||||..||.|| .||.||.|||||.
BL01301 239 ATTTTTCTCTCGTCGCTTCCTACACAGAAGAAAAACGCGCGATCCATATC 288
BSNT_03121___ 277 GGGGATATAAAAGGCCC---------TCCGAATCACGGGTTTGGTTCCAT 317
||||||||.|||||.|| | ||.|.||||||.||
BL01301 289 GGGGATATTAAAGGACCGGCAGGCTTT---------GGATATGGTTCAAT 329
BSNT_03121___ 318 TTGCATGAAATATTTAAAAGATATAGCAAGAGACCACAATAT-ACCGAAA 366
.||.|||||.||||||||.||.|.|||..|.||.||.||.|| .|||..|
BL01301 330 CTGTATGAAGTATTTAAAGGAAAAAGCCCGCGAGCATAACATCCCCGTCA 379
BSNT_03121___ 367 GTCACCGGAGACATCGCCAAACGGGATTGGAATCATGTAGACCGGCTGAT 416
|||||||.|||||.||.|||.||||||||.|.|||||.|||||||||||
BL01301 380 -TCACCGGGGACATTGCTAAAAGGGATTGGGACCATGTGGACCGGCTGAT 428
BSNT_03121___ 417 TCACTTTTATGAAAAACATCAATTCAAAGTATGTATCGATCATGATACCC 466
.||.|||||.|||||.|||||.||..|||||...|||||||.||||.|..
BL01301 429 CCATTTTTACGAAAAGCATCATTTTGAAGTAACGATCGATCCTGATTCAA 478
BSNT_03121___ 467 AATCCGGCAGCATTAAGTGGGTTGATTTGTAA 498
||||||||...|||.|||||...|||.|.|||
BL01301 479 AATCCGGCGAAATTCAGTGGCAGGATCTTTAA 510
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