Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05195 and BL01300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:19
# Commandline: needle
# -asequence dna-align/BSNT_05195___pnbA.1.5803.seq
# -bsequence dna-align/BL01300___pnbA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05195___pnbA-BL01300___pnbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05195___pnbA-BL01300___pnbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05195___pnbA
# 2: BL01300___pnbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1614
# Identity: 976/1614 (60.5%)
# Similarity: 976/1614 (60.5%)
# Gaps: 285/1614 (17.7%)
# Score: 2664.5
#
#
#=======================================
BSNT_05195___ 1 ATGACTCAT-CAAATAGTAACGACTCAATACG----GCAAAG-TAAAGGG 44
|||..|.|| |||.| || ||| ||.||| |.|||| |.||.||
BL01300___pnb 1 ATGTATGATACAACT-GT--CGA---AACACGCTTCGGAAAGCTGAAAGG 44
BSNT_05195___ 45 CACAACGGAAAACAGCGTACATAAGTGGAAAGGCATCCCCTATGCCAAGC 94
||.|.||||||||.|.||.|.||..|..||||||.|.||.||.||.||.|
BL01300___pnb 45 CAGAGCGGAAAACGGAGTCCGTATCTTTAAAGGCGTTCCATACGCAAAAC 94
BSNT_05195___ 95 CGCCTGTCG--GAC--AATGGCGTTTTAAAGCACCTGAGCCGCCTGAAGT 140
|.||.|||| ||| || |.|||...|.|||..||| ||| |
BL01300___pnb 95 CTCCCGTCGGCGACCTAA----GGTTTCGGGAACCGCAGC-----GAA-T 134
BSNT_05195___ 141 G------TGGGAAGATGTCCTTGATGC----CACAGCATACGGCCCTATT 180
| |||||||.||..||.||||| || ||..|||||..||
BL01300___pnb 135 GGAGGCCTGGGAAGGTGAGCTGGATGCTTTTCA----ATTTGGCCCGGTT 180
BSNT_05195___ 181 TGCCCGCAGCCGTCTGAT------TTGCTGTCACTTTCGTATACTGAGCT 224
||.||||||| ||||| |||| |||||
BL01300___pnb 181 TGTCCGCAGC---CTGATGGGGTATTGC---------------CTGAG-- 210
BSNT_05195___ 225 GCCCCGC----------CAGTCCGAGGATTGCTTGTTTGTCAATGTATTT 264
.|.|| .||||.|||||||||.|.|.|.|.|||||.|..
BL01300___pnb 211 --TCAGCGGGGGTTCAAAAGTCTGAGGATTGCCTTTATTTAAATGTGTAC 258
BSNT_05195___ 265 GCGCCTGACACTCCA-AGCCAAA-----ACCTGCCTGTCATGGTTTGGAT 308
||.||.|| | ||.|..| |.||||||||.|||||.|||||
BL01300___pnb 259 GCACCCGA------AGAGGCGGACGGGGATCTGCCTGTTATGGTGTGGAT 302
BSNT_05195___ 309 TCACGGAGGCGCTTTTTATCTCGGCGCAGGCAGTGAGCCATTGTATGACG 358
|||.||.|||||||||||||.||||||.||.|||||.||..|.|||||||
BL01300___pnb 303 TCATGGGGGCGCTTTTTATCGCGGCGCCGGAAGTGAACCGCTCTATGACG 352
BSNT_05195___ 359 GATCAAAACTTGCGGCGCAGGGAGAGGTCATTGTCGTTACACTGAACTAT 408
|..|..|.|||||...|||||||.||||.||.||.||.||..|.||.|||
BL01300___pnb 353 GGACTCAGCTTGCAAAGCAGGGAAAGGTGATCGTGGTCACCATCAATTAT 402
BSNT_05195___ 409 CGGCTGGGGCCGTTTGGCTTTTTGCACTTGTCTTCATTTGATGAGGCGTA 458
||.||.||.|||||.||.||||||||..|.||.|||.|||||| |
BL01300___pnb 403 CGCCTCGGTCCGTTCGGTTTTTTGCATCTATCCTCAATTGATG------A 446
BSNT_05195___ 459 TTCCGA------TAACCTTGGGCTTTTAGACCAAGCCGCCGCACTGAAAT 502
||||.| .||.|||||.||..|.||.|||..|||.||.||..|.|
BL01300___pnb 447 TTCCTACAGCAGCAATCTTGGCCTGCTGGATCAAATCGCGGCTCTCGAGT 496
BSNT_05195___ 503 GGGTGCGGGAGAATATC----TCAGCGTTTGGCGGTGATCCCG--ATAAC 546
|||||...||.|||||| || ||||||||.|| ||| ||.||
BL01300___pnb 497 GGGTGAAAGACAATATCGCTTTC----TTTGGCGGAGA--CCGTCATCAC 540
BSNT_05195___ 547 GTAACAGTATTTGGAGAATCCGCCGG--CGGCATGAGCATTGCCGCGCTG 594
.|.||.||.||||||||.||.||.|| || ||||||||.||..||||.
BL01300___pnb 541 ATTACGGTTTTTGGAGAGTCGGCGGGATCG--ATGAGCATCGCTTCGCTT 588
BSNT_05195___ 595 CTTGCTATGCCTGCGGCAAAAGGCCTGTTCCAGAAAGCGATCATGGAAAG 644
.|.||.|||||....|||||.||.||.||.||..|.||.||.||||||||
BL01300___pnb 589 TTGGCGATGCCGAAAGCAAAGGGGCTTTTTCAACAGGCCATTATGGAAAG 638
BSNT_05195___ 645 CGGCGCTTCCCGAACAATGACAAAAGAACAAGCGGCAAGCACTGCG---G 691
|||.||||||..|||.|||.| ||..|||| .|||| |
BL01300___pnb 639 CGGGGCTTCCGCAACTATGTC-----------CGATAAGC-TTGCGAAAG 676
BSNT_05195___ 692 CTGC---------CTTTTTACAAG--TCCTTGGAATTAATGAGAGCCAGC 730
|||| .||.|| ||| |.||.|..|||.||.|....||.|
BL01300___pnb 677 CTGCAGCAGAAAGATTCTT--AAGGATTCTCGATATTGATCATCATCATC 724
BSNT_05195___ 731 TGGATCAATTGCATACGGTTTCTGCGGAAGATTTGCTAAAAGCGGCTGAT 780
||||.|...|.|||...||.||||...||||..|.||..||||.||.|||
BL01300___pnb 725 TGGAGCGCCTTCATGATGTATCTGATCAAGAACTTCTTGAAGCCGCCGAT 774
BSNT_05195___ 781 CAGCTTCGGA--TTGCAGAAAA----AGAAAATATCTTTCAGCTGTTCTT 824
|||||.||.| || || |||||||||.|||.|..||.|.||
BL01300___pnb 775 CAGCTGCGCACTTT------AATGGGAGAAAATATTTTTGAATTGATTTT 818
BSNT_05195___ 825 CCAGCCCGCCCTTGATCCG--AAAACGCTGC--CTGAAGAACCAGAAAAA 870
.|.|||.||.||||| || |||||..||| |||||| ||.||....
BL01300___pnb 819 TCTGCCTGCGCTTGA--CGAAAAAACCTTGCCGCTGAAG--CCGGAGGTC 864
BSNT_05195___ 871 GCGATCGCAGAAGGGGCTGCTTCCGGC-------ATTCCTCTATTGATTG 913
||..|||||.||||.| |||| ||...||||||.||.|
BL01300___pnb 865 GCCGTCGCAAAAGGCG-------CGGCAAAAGAGATCAATCTATTAATCG 907
BSNT_05195___ 914 GAACAACCCGTGATGAAGG-ATATTTATTTTTCACCCCGGATTCAGACGT 962
||||||.|||||||||||| .|.||..|||||| ||.|.|||||.||
BL01300___pnb 908 GAACAAACCGTGATGAAGGCGTCTTGTTTTTTC-CCTCTGATTCGGA--- 953
BSNT_05195___ 963 TCATT---CTCAG-GAAACGCTTGATGCAGCGCTCGAGTCTTTA------ 1002
||.|| ||.|| |.|| |||..| ||||..||||
BL01300___pnb 954 TCTTTTGCCTGAGAGCAA-----GATCAA-----CGAGATTTTAGAAGAA 993
BSNT_05195___ 1003 -------CTAGGGAAGCCGCTGGCAGAGAAAGTTG---CCGATTTGTATC 1042
.||..||.|||||.| |||..| ||..|.||||||
BL01300___pnb 994 TACATGGGTAAAGAGGCCGCCG-------AAGCCGCCTCCTCTCTGTATC 1036
BSNT_05195___ 1043 CGCGTTCTCTGGAAAGCCAAATTCATATGATGACTGATTTATTATTTTGG 1092
||.|.||..|||||.||||..||.||||||||||.|||.|..|.||||||
BL01300___pnb 1037 CGAGGTCATTGGAAGGCCATGTTGATATGATGACAGATCTGATCTTTTGG 1086
BSNT_05195___ 1093 CGCCCTGCCGTCGCCTATGCATCCGCACAGTCTCATTACGCCCCTGTCTG 1142
|..||..|.||.|..|..||.||.||.||.||.|..||.||..||||||.
BL01300___pnb 1087 CATCCGTCTGTTGTGTTCGCTTCGGCTCAATCACGATATGCATCTGTCTT 1136
BSNT_05195___ 1143 GATGTACAGGTTCGATTGGCACCCG------AAGAAGCCGCCGTACAATA 1186
.||||||.||||.||.|||||..|| .||.|||||||||.|||.|
BL01300___pnb 1137 TATGTACCGGTTTGACTGGCATGCGGATTCAGAGCAGCCGCCGTTCAACA 1186
BSNT_05195___ 1187 AAGCGTTTCACGCATTAGAGCTTCCTTTTGTCTTTGGAAATCTGGACGGA 1236
||||....||||..||||||.||||.|||||.|||||||||.|||||...
BL01300___pnb 1187 AAGCTGCGCACGGCTTAGAGATTCCGTTTGTATTTGGAAATATGGACATT 1236
BSNT_05195___ 1237 TTGGAACGAATGGCAAAAGCGGAGA-TTACG---------GATGAGGTGA 1276
||||||| |||.||.| .|||| ||.||.|.|.
BL01300___pnb 1237 TTGGAAC----------AGCTGACAGGTACGAAGGCCGGTGAAGAAGCGC 1276
BSNT_05195___ 1277 AACAGCTTTCTCACAC-GATACAATCAGCGTGGATCACGTTCGCCAAAAC 1325
|.|.||||.||.| || |||.||..|.||.|||.|..|.||.|||..|.|
BL01300___pnb 1277 AGCTGCTTGCTGA-ACAGATCCAGGCTGCCTGGGTGTCTTTTGCCCGATC 1325
BSNT_05195___ 1326 AGGAAACCCAAGCACCGAAGCTGTGAATTGGCC-GACGTATCATGAAGA- 1373
.|||||.||.||||||||.|.|||.|..||||| || .|||.|||||||
BL01300___pnb 1326 CGGAAATCCGAGCACCGATGATGTCAGCTGGCCTGA-TTATGATGAAGAT 1374
BSNT_05195___ 1374 -AACGAGAGAGACGCTGATTTTAGATTCAGAGATTACGATCGAAAAAGAT 1422
.||| || |.|||||||||||.|||..||||.|..|..|.||||..|||
BL01300___pnb 1375 TCACG-GA-AAACGCTGATTTTTGATCAAGAGGTCGCAGTTGAAAGCGAT 1422
BSNT_05195___ 1423 CCCGAATCTGAAAAAAGGCAGAAACTATT-----CCCTCCAAA------- 1460
||..|.||.||.||.||..||| |.|| || ||.||
BL01300___pnb 1423 CCTTATTCAGATAAGAGAAAGA---TGTTGACAGCC--CCGAACCCGCAG 1467
BSNT_05195___ 1461 ----AGGTGAATAA 1470
||
BL01300___pnb 1468 ATTTAG-------- 1473
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