Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02627 and BL01286

See Amino acid alignment / Visit BSNT_02627 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:19
# Commandline: needle
#    -asequence dna-align/BSNT_02627___ylqH.1.5803.seq
#    -bsequence dna-align/BL01286___ylqH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02627___ylqH-BL01286___ylqH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02627___ylqH-BL01286___ylqH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02627___ylqH
# 2: BL01286___ylqH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 301
# Identity:     200/301 (66.4%)
# Similarity:   200/301 (66.4%)
# Gaps:          38/301 (12.6%)
# Score: 685.0
# 
#
#=======================================

BSNT_02627___      1 ATGAAAGAGCAGACACCGATC----------AGAAAAGCTGTTGCTCTCC     40
                     |||||.||          |||          ||||.|||||||||.||.|
BL01286___ylq      1 ATGAAGGA----------ATCTGTTCCATTAAGAAGAGCTGTTGCGCTTC     40

BSNT_02627___     41 ATTATGACGAACAAAAAGACAAGGCGCCGAGAGTGATTGCCACAGGGAAG     90
                     |.||.||.|||...||.|||||||||||||..|||.||||||.||||..|
BL01286___ylq     41 ACTACGATGAAATGAAGGACAAGGCGCCGAAGGTGGTTGCCAAAGGGTCG     90

BSNT_02627___     91 GGCCATGTA--GCTGACAACATTATCAAAGAAGCGAAAAAAGCAGGGGTC    138
                     ||  ||..|  ||.||.||.||.||..||||.|||.|.|||||.||.||.
BL01286___ylq     91 GG--ATACACGGCGGAGAAGATCATTGAAGAGGCGCAGAAAGCCGGTGTT    138

BSNT_02627___    139 CCGATTCAAGAAGATCGGACCCTTGTCGAATTAATGCGCCATTTGACGGT    188
                     ||||||||.||||||..|||.|||||||||||.||||||||.|||..|.|
BL01286___ylq    139 CCGATTCAGGAAGATGCGACGCTTGTCGAATTGATGCGCCACTTGGAGCT    188

BSNT_02627___    189 AGATGATCAAATCCCTGAAGCTCTTTATGAAACGGTAGCCGAGATTTTTT    238
                     .||.||.||.||.||||||||.|||||.||.|..||.||||||||.||||
BL01286___ylq    189 TGACGACCACATTCCTGAAGCGCTTTACGAGATCGTCGCCGAGATCTTTT    238

BSNT_02627___    239 CATTCATTTACAAATTGGACGAAAGCGTAAAAAACAAAAAATAG------    282
                     |||||.|.||.|...|.||.|       ||||||..|||||.||      
BL01286___ylq    239 CATTCGTCTATACGCTTGATG-------AAAAAATGAAAAAGAGGGAATG    281

BSNT_02627___    282 -    282
                      
BL01286___ylq    282 A    282


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