Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02652 and BL01266
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_02652.1.5803.seq
# -bsequence dna-align/BL01266___fliK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02652-BL01266___fliK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02652-BL01266___fliK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02652
# 2: BL01266___fliK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1693
# Identity: 886/1693 (52.3%)
# Similarity: 886/1693 (52.3%)
# Gaps: 542/1693 (32.0%)
# Score: 1990.0
#
#
#=======================================
BSNT_02652 1 GTGAAGCTGCTTGAATTAGCGGGA---CCTTTGCTG-CAAACC------- 39
.|||.|||..|||| ||..| ||||||.|| ||||||
BL01266___fli 1 TTGAGGCTTTTTGA-----CGCAATCTCCTTTGATGCCAAACCTGCGGTG 45
BSNT_02652 40 -ACAACGGGTTCTGCCGCTAAAAACATG--AAAAGTAGCCAAGGA----G 82
||| |||| ||.|| ||||..||| |||| |
BL01266___fli 46 GACA-------CTGC--------ACCTGCAAAAACGAGC--AGGACGCCG 78
BSNT_02652 83 TT----------TTTCAAAACTGGCTTATGTCTGAGGCTGGATTGAAGGA 122
|| |||||.| |||| |||..| ||||||
BL01266___fli 79 TTGGGCGCGCTCTTTCAGA--------ATGT-----GCTCCA--GAAGGA 113
BSNT_02652 123 A-----CTC------------TCAGAACAAGGAAAGGGTACTCCTAATTC 155
| ||| ||| ||||||
BL01266___fli 114 AAACAGCTCACTTTCCCCTTTTCA--------AAAGGG------------ 143
BSNT_02652 156 CGAAGATCAGCTTTTAGCA-GATGCGCTTAAAAAGATCGGT-GAATGGCT 203
.|||||.| |||.| || |||.||| ||.| |||.||||
BL01266___fli 144 AGAAGAGC--CTTCT--CAGGATACGC----------CGTTGGAAGGGCT 179
BSNT_02652 204 AAATGCAAGTCCTGAAGATCAA-----GACAAACAA--AATGCGA-ATCT 245
..||||.|..|||||| ||| ..||||.|| || || |.||
BL01266___fli 180 -TTTGCATGAACTGAAG--CAATGGCTTTCAAATAAGGAA---GACAGCT 223
BSNT_02652 246 TTTGCAAACATTAAGCAAACTGACAGGGAAACAATT-------------- 281
.||.|| ||.||| ||||.|.| ||||
BL01266___fli 224 CTTTCA---ATGAAG---ACTGGCTG------AATTCCCTTCAGCAGCTT 261
BSNT_02652 282 --GGATGC-GAATGC-TCTGCAAATG---TTGCAAAATCTTTTGCA---- 320
.|| || |||||| |||.|..||| |.||| ||.|||
BL01266___fli 262 GAAGA-GCTGAATGCATCTCCGGATGAACTGGCA------TTGGCAGAAC 304
BSNT_02652 321 AGCAGTTAAATCAA--AAATGTCAGGCGGGACGGATCAGTTGCTCACAGA 368
|||.||||.|.||| |||.| ||.|||| .||
BL01266___fli 305 AGCTGTTACAACAAATAAAAG----------------AGCTGCT---TGA 335
BSNT_02652 369 TA------------CGGAGAAAATCTTTTCAGAAGCTAAAACGGCTCTGA 406
.| |.|| |.|||| ||..||||||| ||||
BL01266___fli 336 AAAAGCCGCCCTGCCTGA-ACAATC--------AGGCAAAACGG--CTGA 374
BSNT_02652 407 GTGCCAATGATTCTGCTTCTGAC-ATTAATGGAGCACTGAAGTCTGATAC 455
|||.||.|.|| ||| |||.| |..||.|..|.||.||
BL01266___fli 375 -TGCTAAAGCTT-TGC--CTGCCGACGAAAGCGGGACAGA---------- 410
BSNT_02652 456 AGAGCAATCAAATCATGAAAATGAAGTATCCGAGCCTGCTAAAGAGCTTA 505
||||| .|||||.| .|||| |||||.|| ||.
BL01266___fli 411 AGAGC----------CGAAAAAG-----CCCGA-CCTGCAAA-----TTC 439
BSNT_02652 506 TCTATATCCAGATGTTCATTAGCCAGCTCGTAGAAGGGAATAATCTGACT 555
|| ..||||| |||| .|||||..||| ||
BL01266___fli 440 TC---GGCCAGA--TTCA----GCAGCTGCTAG---------------CT 465
BSNT_02652 556 GATCGCGGGAATGGCAATGAAGCTCA--TGCCATTTACCAAAA--TGGAG 601
|.||.||..||||||..||| .|.||.| ||||| |.|
BL01266___fli 466 ------GCGATTGTAAATGAAAATCAACCGTCACT---CAAAACTTCG-- 504
BSNT_02652 602 ATCAATTCCTTTCTGCATTA--GAAA-AGAAG--GGTGTATCTC------ 640
|||.|| .|.|.|||| |||| ||..| ||..|.||||
BL01266___fli 505 --CAAATC---GCAGAATTATTGAAACAGGCGCCGGAATTTCTCGCCGCT 549
BSNT_02652 641 -----AACAAA-----------------TAATTCAGGATCTTAAACAGCA 668
|||||| |.|||.|.||.|||||||..||
BL01266___fli 550 CTTCAAACAAAGGCGGGAGCAGAAGGGCTGATTGATGAGCTTAAACGTCA 599
BSNT_02652 669 AATATTCACTAAAG--CTGAGTCAAGTTCAAAACTTTACTCGATG----A 712
|.|.|||||.|||| |.|||.||| ||..|.||||..||.||| |
BL01266___fli 600 ATTTTTCACGAAAGATCCGAGCCAA--TCGCAGCTTTTGTCCATGTCAAA 647
BSNT_02652 713 CAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATG 762
|| |.|||||||||||.||..|||||||||||||.||.||| |||
BL01266___fli 648 CA----CCGAGCTGAAAAGCTTGAAAAGCTTAATGGAGCAGATG---ATG 690
BSNT_02652 763 CTTCCTCAA------AAAGGGACC--AAAGAATGGAGTTTAGCTGAAAGC 804
..|.||| ||..|||.| |||||.||||...|.||.||||||
BL01266___fli 691 --AACGCAAACGCTGAACCGGATCAAAAAGAGTGGAAAATGGCCGAAAGC 738
BSNT_02652 805 CAGCTGAAAGCCTTCTTGTTATCGAAAT-CATCCGAATCATCA-CAAGAC 852
.|.||.||.|| ||| | ||||.| |||||
BL01266___fli 739 GAACTCAAGGC--------------AATGC-------TCATGAGCAAGA- 766
BSNT_02652 853 TTTGGGAAGCG-TGTTCTCACACCGCTCTCGCAGAG-----TTTATCCAG 896
.||.|| |||| .||||..|.||| .||.|||
BL01266___fli 767 -----AAACCGATGTT--------TCTCTTTCTGAGAAGCCGTTGTCC-- 801
BSNT_02652 897 CAAAAATGCATCGGATGTTTCTG----GAAG---TATTCAGCCTGTA-GA 938
..||||| || |||| .|||||..|||.| ||
BL01266___fli 802 -------------TTTGTTT-TGAACAGAAGAGAAATTCAAACTGAAGGA 837
BSNT_02652 939 TAGTAA----------ATCAG--GACTCCAAATGCTGTTTTCGGG----T 972
.||.|| |.||| ||.|| |||.||.|.|.|.|| |
BL01266___fli 838 AAGCAAGGCCAAAAGGAACAGCCGATTC--AATCCTCTGTACTGGCCAAT 885
BSNT_02652 973 TATCGGA---GCATAG----GA-----GGAGTACAAACACTTGATCTGCA 1010
.|||||| |||.|| || ||..|.||..| .||.||.
BL01266___fli 886 CATCGGACAGGCACAGCGCTGATCCAGGGTCTCCAGCC-----TTCGGCG 930
BSNT_02652 1011 GCAGATG----------TCATCTGATATACCAAA----TACCGAAACAAA 1046
|||||.| |||.|.|| ||| |.|.| ||||||
BL01266___fli 931 GCAGAGGAAGCTTCCGCTCAGCCGA------AAAGCTTTTCAG-AACAAA 973
BSNT_02652 1047 AACGGTGGCTGATCAAGTGATTAATGCGTGGAAGCAGATGAAATATACGC 1096
|..|||..| |.|||||.||||||||.|||||||
BL01266___fli 974 ---------TTCTCAGCT--------CATGGAAACAGATGAAGTATACGC 1006
BSNT_02652 1097 CTTTCGGCAGATCGACGGGAAGTTTCACTATTCGGCTGAACCCTGAACAT 1146
|.||||||||.|||||.||.||||||||.||.||.|||||.||||||.||
BL01266___fli 1007 CGTTCGGCAGGTCGACAGGCAGTTTCACGATCCGCCTGAATCCTGAAAAT 1056
BSNT_02652 1147 TTAGGATTTGTCACAATCAAGCT-GACAAATGAAAATGGAATG-TTTCAG 1194
.|.||.|||.||||.|||||||| |.|||| .|..|.||.||| |||||
BL01266___fli 1057 CTTGGCTTTATCACGATCAAGCTCGTCAAA-CAGCACGGGATGTTTTCA- 1104
BSNT_02652 1195 AGTAAAATCATAGCATCTAGCCAATCAGCAAAAGAATTGCTTGAACAGCA 1244
||.||||||||.|||||.|.|||.||.||.|||||..||||.|||||..|
BL01266___fli 1105 AGCAAAATCATCGCATCGACCCAGTCGGCTAAAGAGCTGCTCGAACACAA 1154
BSNT_02652 1245 TCTTCCTCAGCTGAAGCAATCATTGCCGAATATGGCCGTCCAAATTGACC 1294
|||..|.||.||.||.||..|..||||.||.|||.|.||.||||||||||
BL01266___fli 1155 TCTCGCGCATCTTAAACAGGCGCTGCCCAACATGTCTGTGCAAATTGACC 1204
BSNT_02652 1295 GTTTTACTCTTCCGGTCCAAAGCGGGGATCAGCCGATATACGGCCAGCTT 1344
|.||...|.|||||.|.||||.|.|.||||| ||..|.|||.|||||.
BL01266___fli 1205 GCTTCGGTGTTCCGCTTCAAAACAGCGATCA---GACTTTCGGACAGCTG 1251
BSNT_02652 1345 GCTGATGAACAGAAACAGCAGCAAGAGGGGCAG--AGA-CAGCAAAGACA 1391
||.||.||..|||||.|.|||||..||..|.|| ||| ||||||||
BL01266___fli 1252 GCGGACGATGAGAAAAACCAGCATCAGCCGAAGCAAGATCAGCAAAG--- 1298
BSNT_02652 1392 GAAAAAGCAATCAAAT---GATTTTGGCGATCTGCTCGATGA-------- 1430
.|||||...|||| ||||||...||..|.||.|||||
BL01266___fli 1299 ---TAAGCAGGAAAATGAGGATTTTCAGGAGTTTCTGGATGAGCTTATCG 1345
BSNT_02652 1431 AGTGTCGAT----GGTTGAAATGGAGGAAGAAGAATGA----- 1464
||..||||| | ||.|..|||||.|| ||
BL01266___fli 1346 AGACTCGATCACAG---GACAGCGAGGAGGA-----GATCTAA 1380
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