Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02663 and BL01261
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:22
# Commandline: needle
# -asequence dna-align/BSNT_02663___fliY.1.5803.seq
# -bsequence dna-align/BL01261___fliY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02663___fliY-BL01261___fliY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02663___fliY-BL01261___fliY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02663___fliY
# 2: BL01261___fliY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1208
# Identity: 815/1208 (67.5%)
# Similarity: 815/1208 (67.5%)
# Gaps: 145/1208 (12.0%)
# Score: 2583.0
#
#
#=======================================
BSNT_02663___ 1 ATGGAGAAT---AATAGATTATCTCAAGATGAGATTGACGCGCTTCTTAA 47
||||||||| |||||.|||||.||.|||||.|||||.|||||.|||||
BL01261___fli 1 ATGGAGAATAACAATAGGTTATCACAGGATGAAATTGATGCGCTGCTTAA 50
BSNT_02663___ 48 CGG---------TACTGGC-----AGCACGCTTGATGAGCCAGA-----G 78
.|| ||| ||| ||| ||||||| |
BL01261___fli 51 AGGCGGCGATGATAC-GGCTCAAGAGC----------AGCCAGAATCAGG 89
BSNT_02663___ 79 GTTCCGGAAGTAGATGACTTATCGGAAATGGAGCGTGATGCGATCGGTGA 128
||| ||...|| |||||.|..|||.|||||||.||
BL01261___fli 90 GTT------GTCCCTG-----------ATGGAACAGGATACGATCGGGGA 122
BSNT_02663___ 129 AATCGGTAATATTTCATTCGGCAGTTCTGCGACAGCACTGTCAACGCTTT 178
||||||.||.|||||.||.||.||.|||||.|||||..||||.||..|.|
BL01261___fli 123 AATCGGAAACATTTCCTTTGGGAGCTCTGCAACAGCTTTGTCCACTTTAT 172
BSNT_02663___ 179 TAAATCAAAAGGTCGATATTACGACTCCAAGCGTAACGGTCATTCCAAGA 228
|.||||||||.|||||.|||||.||.||.|..||..||||.|||..||.|
BL01261___fli 173 TGAATCAAAAAGTCGAAATTACAACGCCGACTGTTTCGGTGATTGAAAAA 222
BSNT_02663___ 229 AG----TAAAATCAGCGATGCATTTCCTG-AACCGTATGTAGCGATTGAA 273
|| |.|||| |||| |.||||.| |.||||||||..|.||.|..
BL01261___fli 223 AGCCATTTAAAT----GATG-AGTTCCCGCACCCGTATGTTTCAATCGGT 267
BSNT_02663___ 274 GTGAATTATACGGAGGG--CTTCAGCGGAAGCAACCTGTTAGTCGT---- 317
||||..|||||.||.|| .|||| ||||.|||.||..|.|||.|
BL01261___fli 268 GTGAGCTATACAGAAGGTTTTTCA--GGAAACAATCTTCTCGTCATCAAG 315
BSNT_02663___ 318 --GGAACAAAGTGACGCGGCGATCATTGCTGACTTAATGATCGGGGGAGA 365
|||| ||.||.|||||||||||||||||.|||||.||||||||
BL01261___fli 316 CAGGAA------GATGCCGCGATCATTGCTGACTTGATGATGGGGGGAGA 359
BSNT_02663___ 366 CGGAA--AAGGTGCGGACCCTTCACTGGGTGAAATCCATTTAAGTGCGGT 413
|||.| || .||.||.||.||.||.||.|||||.|||.||||.||.||
BL01261___fli 360 CGGGACGAA--CGCAGATCCGTCGCTTGGCGAAATTCATCTAAGCGCCGT 407
BSNT_02663___ 414 TCAAGAAGCAATGAACCAAATGATGGGATCGGCTGCCACATCAATGTCTA 463
|||.|||||.|||||||||||||||||.||.|||||.|||||.|||||.|
BL01261___fli 408 TCAGGAAGCGATGAACCAAATGATGGGTTCCGCTGCGACATCGATGTCCA 457
BSNT_02663___ 464 CTGTATTCAGTAAAAAAATTGATATTTCACCTCCTCGG--GTTGAATTGT 511
|.||.|||||.||.||.||.||||||||.||.| ||| |||||..|..
BL01261___fli 458 CCGTCTTCAGCAAGAAGATCGATATTTCTCCGC--CGGAAGTTGACCTCC 505
BSNT_02663___ 512 TGGATGTTACTGAAGAA----AAGGGTACAGACCGTATTCCTGATGATGA 557
|.|||||.| ||||| ||||| |||||.|..|||||..|.||.||
BL01261___fli 506 TTGATGTGA---AAGAAGGGGAAGGG-ACAGAGCAAATTCCGAAAGAGGA 551
BSNT_02663___ 558 AATGCTGGTGAAAGTTTCTTTCA-ACTTAAAGGTGGGAGAATTAATAGAC 606
...|||.||.|||||.||||||| || ||||.||.|||||..|.||.||.
BL01261___fli 552 CCCGCTCGTCAAAGTATCTTTCAGAC-TAAAAGTCGGAGATCTGATCGAT 600
BSNT_02663___ 607 TCCAGC--ATTATGCAGCTTTACCCATTGACATTTGCGAAAGATTTAATT 654
|| || ||||||||||||||.||..||||.|||||.||||||.|.|||
BL01261___fli 601 TC--GCATATTATGCAGCTTTATCCGCTGACCTTTGCAAAAGATCTGATT 648
BSNT_02663___ 655 --TCAAGCCTTATGAACTCAGAAAGTGCAGAGGAAGAAGAAACGGTGCAG 702
|.|| |||..||.||||.|.| || |.||||||..|.|||.||
BL01261___fli 649 GATGAA---TTAACAAATCAGGACG-GC----GGAGAAGAGCCTGTGAAG 690
BSNT_02663___ 703 CCCGA--AGTTACATA----CGAACAGCCGAAAGAGCCTGTGACGCCAGA 746
.|.|| ||.||||.| ||.|||| ||||.|.| |.||||..|
BL01261___fli 691 ACTGAAGAGGTACAGACGCCCGTACAG--GAAAAACC----GGCGCCTAA 734
BSNT_02663___ 747 GCCGCGTATT--GAACC------GA---AGCAACAGCAGCAGCCGCCAAA 785
.| ||.||| |.||| || ||..||||.|||.|.||||.||
BL01261___fli 735 TC--CGAATTCGGCACCTGCTCAGACACAGAGACAGGAGCCGGCGCCTAA 782
BSNT_02663___ 786 AAGGCAGGGAACAGCAAAAAAAGCAGCGCCAGTTCAGGTTTCACCGGTGG 835
|.||||.||.||.||||||....|||.|||.||.|||||..||||||..|
BL01261___fli 783 ACGGCAAGGGACGGCAAAAGTTTCAGAGCCTGTGCAGGTGGCACCGGCAG 832
BSNT_02663___ 836 AATTT---TCCGCGTTTGATC--CAAAC-GAAGCTGTACAAGCCCCTATT 879
|.||| ||| ||||..| ||.|| ||||| |.|...||.|| ||
BL01261___fli 833 AGTTTCAATCC---TTTGCCCCTCAGACTGAAGC-GCAGCCGCACC--TT 876
BSNT_02663___ 880 CATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCT 929
||.||.||.||.|||||..|||||||.||..|.||..|.||.||.|||||
BL01261___fli 877 CAAAACCTTGACATGCTCATGGATATTCCTTTGTCCGTCACGGTCGAGCT 926
BSNT_02663___ 930 TGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAA 979
.||.||.||.||..|.|||||.||||||.|..|.||.||.||..||||.|
BL01261___fli 927 GGGGAGGACAAACCGCAGCGTCAAAGAGGTGCTTGAACTGTCAACCGGCA 976
BSNT_02663___ 980 GTATTATCGAGCTTGATAAATTAGCTGGTGAGCCTGTAGATATTTTAGTT 1029
||||.||.||||||||.|||.|.||.|||||||||||.||.||.||.||.
BL01261___fli 977 GTATCATTGAGCTTGACAAACTCGCCGGTGAGCCTGTTGACATCTTGGTC 1026
BSNT_02663___ 1030 AATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTT 1079
||.|||||..|||||||.||||||||.|||||.|||||.||.||||||||
BL01261___fli 1027 AACCAGCGCGTCGTTGCTAAAGGCGAAGTCGTCGTCATAGACGAAAACTT 1076
BSNT_02663___ 1080 CGGAGTAAGAGTCACTGACATTTTAAGCCAGGCAGAGCGCATTAATAATT 1129
|||.||.||.||.||.||||||||.||.|||||.||.||.||.|..||.|
BL01261___fli 1077 CGGCGTCAGGGTGACAGACATTTTGAGTCAGGCTGAACGAATCAGCAAAT 1126
BSNT_02663___ 1130 TAAAATAA 1137
||..||||
BL01261___fli 1127 TACGATAA 1134
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