Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02666 and BL01258
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:22
# Commandline: needle
# -asequence dna-align/BSNT_02666___fliP.1.5803.seq
# -bsequence dna-align/BL01258___fliP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02666___fliP-BL01258___fliP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02666___fliP-BL01258___fliP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02666___fliP
# 2: BL01258___fliP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 675
# Identity: 524/675 (77.6%)
# Similarity: 524/675 (77.6%)
# Gaps: 18/675 ( 2.7%)
# Score: 2031.5
#
#
#=======================================
BSNT_02666___ 1 ATGAATGAGTTTATAAATATTTTCAGTTCAAGCGATCCGGAAAACGTAA- 49
||||||||||||||..||.|.||.|.||||||||||.|||.|||.||.|
BL01258___fli 1 ATGAATGAGTTTATGGATTTATTTAATTCAAGCGATGCGGCAAATGTCAG 50
BSNT_02666___ 50 -------GTTCGACTGTTAAATTACTATTATTGTTAACTGTATTTTCAGT 92
||.||.|| .||.||..|.||| ||.||||||||..|
BL01258___fli 51 CGCCAGCGTCCGGCT-----CTTGCTGCTTTTG---ACAGTATTTTCGAT 92
BSNT_02666___ 93 GGCGCCTGGAATATTGATTCTT-ATGACTTGTTTTACTCGCATCGTCATT 141
.||.||.||.||.|||| |||| |||||||||||.||..|..|.|||||.
BL01258___fli 93 CGCTCCGGGTATCTTGA-TCTTGATGACTTGTTTCACAAGGGTTGTCATC 141
BSNT_02666___ 142 GTTCTGTCATTTGTCAGAACTTCACTTGCGACGCAATCTATGCCCCCAAA 191
||.|||||.||||||.|.||.||.||.||.||.||.||.|||||||||||
BL01258___fli 142 GTCCTGTCCTTTGTCCGGACATCGCTGGCAACACAGTCAATGCCCCCAAA 191
BSNT_02666___ 192 CCAGGTTCTTATCGGGCTTGCGCTGTTTTTAACATTTTTTATCATGGCTC 241
||||||.||.|||||.|||||.|||||..|.||||||||.||.||||..|
BL01258___fli 192 CCAGGTGCTGATCGGACTTGCACTGTTCCTGACATTTTTCATTATGGGGC 241
BSNT_02666___ 242 CTACTTTTTCAGAAATTAATAAAGAAGCGCTGACCCCATTAATGGACAAC 291
|.|||||||||||.||||||||||||||||||||.||.||||||.||||.
BL01258___fli 242 CGACTTTTTCAGAGATTAATAAAGAAGCGCTGACGCCTTTAATGAACAAT 291
BSNT_02666___ 292 AAAATCAGCTTGGATGAAGCGTATACGAAAGCTGAGGAACCGATTAAAGA 341
|||||||.||||||||||||.|||||.|||||.||.|..|||||.|||..
BL01258___fli 292 AAAATCACCTTGGATGAAGCTTATACAAAAGCGGAAGCCCCGATCAAAAC 341
BSNT_02666___ 342 ATTTATGAGTAAACACACAAGGCAGAAGGATCTGGCGCTGTTTATGAATT 391
|||||||||.||.||.|||||.|||||.||||||||..|.||||||||||
BL01258___fli 342 ATTTATGAGCAAGCATACAAGACAGAAAGATCTGGCTTTATTTATGAATT 391
BSNT_02666___ 392 ACGCGAAAATGGATAAACCTGAATCATTAAAGGATATTCCGTTAACAACA 441
||||.||.|||||.|..|||||.||..|.||.|||||||||.|..||||.
BL01258___fli 392 ACGCAAAGATGGAAACGCCTGAGTCCATCAATGATATTCCGCTTTCAACT 441
BSNT_02666___ 442 ATGGTTCCGGCTTTTGCCATATCGGAGCTTAAAACAGCATTTCAAATAGG 491
||||||||.||.||||.|||.|||||..|.|||||.||.||||||||.||
BL01258___fli 442 ATGGTTCCTGCGTTTGTCATCTCGGAATTGAAAACCGCGTTTCAAATGGG 491
BSNT_02666___ 492 TTTTATGATTTTTATCCCTTTTTTAATTATAGATATGGTAGTGGCGAGCG 541
.||||||||.|||||.||.|||.|.|||||.||||||||.|||||.||.|
BL01258___fli 492 ATTTATGATATTTATACCGTTTCTGATTATCGATATGGTTGTGGCAAGTG 541
BSNT_02666___ 542 TCTTGATGTCAATGGGAATGATGATGCTGCCTCCAGTTATGATTTCTCTG 591
|.||||||||.|||||.|||||||||||.||.||.||.||||||||.|||
BL01258___fli 542 TTTTGATGTCGATGGGGATGATGATGCTTCCGCCGGTCATGATTTCACTG 591
BSNT_02666___ 592 CCCTTTAAAATATTACTTTTTGTTTTGGTAGACGGCTGGTATTTAATTGT 641
||.|||||.||.||.||.|||||..|.|||||.||||||||||||||.||
BL01258___fli 592 CCGTTTAAGATTTTGCTGTTTGTGCTTGTAGATGGCTGGTATTTAATCGT 641
BSNT_02666___ 642 GAAATCTTTGCTTCAGAGCTTTTAG 666
.|||||||||||.||.|||||||||
BL01258___fli 642 TAAATCTTTGCTGCAAAGCTTTTAG 666
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