Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02673 and BL01253
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_02673___flhF.1.5803.seq
# -bsequence dna-align/BL01253___flhF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02673___flhF-BL01253___flhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02673___flhF-BL01253___flhF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02673___flhF
# 2: BL01253___flhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1206
# Identity: 737/1206 (61.1%)
# Similarity: 737/1206 (61.1%)
# Gaps: 198/1206 (16.4%)
# Score: 2104.5
#
#
#=======================================
BSNT_02673___ 1 ATGAAAATAAAAAAATTTACTGCTGCTTCAATGCAAGAAGCTGCACTTCT 50
||||||||.|||||||||...||||.|||.|||||.|||||..||...|.
BL01253___flh 1 ATGAAAATCAAAAAATTTGTAGCTGGTTCTATGCAGGAAGCCACAAAGCA 50
BSNT_02673___ 51 CATCAGAAAAGAGTTAGGTAATGAAGCGGTCATATTAAATTCAAAAAAAA 100
.||.|.|.|.|||.|.||.|||||.||.||.||.||.|||||.|||||||
BL01253___flh 51 AATTATACAGGAGCTCGGGAATGACGCCGTAATCTTGAATTCTAAAAAAA 100
BSNT_02673___ 101 TTAAAAAGCGAAAATGGTTTGGCCTCATCAACAAGCCTGCTGTTGAAGTA 150
||.|||||.||||||...|.|||.|..|.||.||..|.|..||||||||.
BL01253___flh 101 TTCAAAAGAGAAAATTTCTCGGCTTTGTGAAAAAAACCGGGGTTGAAGTG 150
BSNT_02673___ 151 ATCGCCGTATTGGATCAGGACTTTCTTGA------GAAAAAAACGCCTCA 194
|||||.||..|.||.|||||||||...|| |||..||..||.|||
BL01253___flh 151 ATCGCGGTCGTCGACCAGGACTTTTCCGACGCAAGGAAGCAAGAGCGTCA 200
BSNT_02673___ 195 GAAGGCAGCTGAACCGAAACAAA--CATTAAAAACTCCGGT-CAGCAGTC 241
.|||.|.|.|...|.|.|||||| |.|| |.||.|| |.||||.|
BL01253___flh 201 AAAGCCCGTTTTCCGGGAACAAAGCCCTT-----CGCCTGTCCCGCAGCC 245
BSNT_02673___ 242 CGA-------------------------AAATAGAGGAGAGAACATATCC 266
.|| |||.||..||.|||| |
BL01253___flh 246 GGACCATCTTGATTTGGCAAGCCAAGTGAAAGAGCTGAAAGAA------C 289
BSNT_02673___ 267 CCCTCAAATTCCGGCGCAACAGGAGCTAGGTGATTTTTCAGCATATCAAT 316
..||..||.|.|| |||.||.||| ||||.|.|..|
BL01253___flh 290 TGCTGGAAATGCG--GCATCATGAG-------------CAGCCTGTTGA- 323
BSNT_02673___ 317 CTGTACTTCCTGAGCCGCTGCGAAAAGCAGAAAAGCTTTTG--CAAGAAA 364
|||.||.|||||.||||||..|||.||.||..||||..|| .||||||
BL01253___flh 324 -TGTGCTGCCTGAACCGCTGAAAAAGGCGGACCAGCTCCTGGCAAAGAAA 372
BSNT_02673___ 365 CAGGGATCAAAGAGTC---------TACGAAAACGAACACTC-------T 398
..||.||| |.| |||||||.|| ||| |
BL01253___flh 373 GGGGTATC-----GCCGGCCATCCGTACGAAAGCG----CTCGGCCGGTT 413
BSNT_02673___ 399 GAAAAAATTGCTTCGCTTCTCTGTTGAAGCAGGCGGC------TTGACTG 442
|| .|..|.|||| ||.||| ||.|||| |.|||.|
BL01253___flh 414 GA-------TCAGCACTTC----TTTAAG-AGACGGCGAAGAGTGGACGG 451
BSNT_02673___ 443 AAGAAAATGTTGTCGGCAAACTT--CAGGAAATACTATG--CGATACGCT 488
|.||||| |..|..|||..|||| ||| ||.||.|| ||||...||
BL01253___flh 452 ATGAAAA-GACGCTGGCGCACTTAACAG---ATGCTTTGGCCGATCTTCT 497
BSNT_02673___ 489 GCCCGCAGCAGACAA-GTGG--CAGGA---GCCAATTCATTCAAAATATA 532
.||| ||.|| .||| ||||| |.|.||||||||..|||||.
BL01253___flh 498 TCCC------GATAATCTGGAACAGGACGTGGCGATTCATTCGCAATATG 541
BSNT_02673___ 533 TCGTTCTCTTTGGTTCAACAGGGGCTGGTAAAACAACTACACTGGCTAAA 582
||||.|||||.||.||.||.||.|..||.|||||.||.|||.||||.||.
BL01253___flh 542 TCGTGCTCTTCGGATCGACCGGAGTCGGCAAAACGACGACATTGGCAAAG 591
BSNT_02673___ 583 CTCGCAGCCATATCTATGCTTGAAAAACATAAAAAAATCGCTTTTATTAC 632
|||||.||....|||.|.||.|||||.||.|||||||||||||||||.||
BL01253___flh 592 CTCGCCGCTTCTTCTGTACTGGAAAAGCAGAAAAAAATCGCTTTTATCAC 641
BSNT_02673___ 633 AACAGATACGTATCGTATTGCAGCTGTTGAACAGTTGAAAACATACGCTG 682
.||.||||||||..|.||||||||.|||||||||.|.|..|||||.||.|
BL01253___flh 642 GACCGATACGTACAGGATTGCAGCGGTTGAACAGCTCAGGACATATGCCG 691
BSNT_02673___ 683 AACTGCTGCAGGCTCCTCTGGAAGTTTGCTATACAAAAGAAGAATTT--- 729
|.||.|||.|.||.||.||.||.||.|||||.||.||||||||.|||
BL01253___flh 692 AGCTTCTGAATGCGCCGCTTGAGGTGTGCTACACGAAAGAAGAGTTTAAA 741
BSNT_02673___ 730 ------CAGCAGGCGAAGGAGTT-----ATTTTCTGAGTATGATCATGTG 768
||||| || |||| |||| |||.||.||.
BL01253___flh 742 GCTGCCCAGCA----AA--AGTTCGCCGATTT--------TGACCACGTC 777
BSNT_02673___ 769 TTTGTTGATACAGCCGGAAGAAACTTCAAGGACCCGCAATACATTGAT-- 816
||..|||||||.||.||..|.||.|||||.|||..|||||| || |
BL01253___flh 778 TTCATTGATACGGCGGGCCGGAATTTCAAAGACGGGCAATA---TG-TCA 823
BSNT_02673___ 817 --GAACTGAAAGAAACGATTCCTTTTGAGAGCAGCATTCAGTCATTTCTT 864
||.|||||.||||..|||||.||||||.|.|..||.|||.|.|||||.
BL01253___flh 824 GGGAGCTGAAGGAAATCATTCCGTTTGAGCGTAAGATACAGGCGTTTCTC 873
BSNT_02673___ 865 GTTTTATCCGCGAC-TGCAAAATATGAAGATATGAAGCATATTGTCAAAC 913
||..|.|||||||| .|| ||.||.||.|||||||||.|..|..|.||.|
BL01253___flh 874 GTCATGTCCGCGACGAGC-AAGTACGAGGATATGAAGGAGCTCATTAAGC 922
BSNT_02673___ 914 GGTTTTCATCCGTCCCTGTCAATCAGTATATTTTTACGAAAATAGATGA- 962
.|||.|||..|.|.||..||.||||||..||.||.||||||.|.|||||
BL01253___flh 923 AGTTCTCAAGCATTCCGATCGATCAGTTGATATTCACGAAAGTGGATGAG 972
BSNT_02673___ 963 AACGACTTCCTTAGGTTCTGTATTTAATATACTGGCAGAATCAAAAATAG 1012
|.||| |||.||.||....||..|.|||.|.||.||.|||||.|.|||.|
BL01253___flh 973 ACCGA-TTCGTTGGGAAGCGTCATGAATCTGCTCGCCGAATCGAGAATCG 1021
BSNT_02673___ 1013 GTGTCGGGTTTATGACAAACGGACAGAATGTGCCTGAGGATATACAGACT 1062
|..||||.|.|||.|||||||||||.|||||.||.||||||||
BL01253___flh 1022 GCCTCGGCTATATTACAAACGGACAAAATGTTCCGGAGGATAT------- 1064
BSNT_02673___ 1063 GTATCTCCACTTGGT-----------TTTGTGAGGATGCT------GTGC 1095
.|.|.|||| || |||||.||..|||| |||.
BL01253___flh 1065 ---CCGCTACTT-GTCAAACGCAGCATTTGTCAGACTGCTTACGGGGTGT 1110
BSNT_02673___ 1096 AGATGA 1101
.||
BL01253___flh 1111 TGA--- 1113
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