Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02676 and BL01251
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_02676___cheB.1.5803.seq
# -bsequence dna-align/BL01251___cheB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02676___cheB-BL01251___cheB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02676___cheB-BL01251___cheB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02676___cheB
# 2: BL01251___cheB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1196
# Identity: 713/1196 (59.6%)
# Similarity: 713/1196 (59.6%)
# Gaps: 244/1196 (20.4%)
# Score: 1955.0
#
#
#=======================================
BSNT_02676___ 1 TTGATTCGTGTGCTTGTAGTTGATGATTCAGCTTTTATGAGAAAAATGAT 50
.||||||||||.|||||.|||||.||.||.||||||||||||||.|||||
BL01251___che 1 ATGATTCGTGTTCTTGTCGTTGACGACTCTGCTTTTATGAGAAACATGAT 50
BSNT_02676___ 51 ----AAGTGATTTTCTGACCGAGGAAAAGC--------AGATAGAAGTAA 88
|||| |||| ||.|.| ||||.|..|||.
BL01251___che 51 CACCAAGT--TTTT----------AACATCCAATCACGAGATTGCTGTAG 88
BSNT_02676___ 89 TCGGAACTGCGAGAAACGGAGAAGAAGCGCTTAAGAAGATTGAATTATTA 138
..|||||.||.||||||||.||.||||||||..|.||.||
BL01251___che 89 CAGGAACGGCAAGAAACGGCGAGGAAGCGCTCCAAAAAAT---------- 128
BSNT_02676___ 139 AAA----------CCGGATGTTATTACTCTTGATGTTGAAATGCCGGTCA 178
.|| ||||||||.||.||..|.|||.||||||||||.||.|
BL01251___che 129 CAAGGAGCTCCGTCCGGATGTGATCACATTGGATATTGAAATGCCTGTGA 178
BSNT_02676___ 179 TGAATGGGACAGATACGCTCCGCAAA--ATTATTGAGATTTAT-AACTTG 225
||||.||.|.|||.|||.| |.||| |||||.|.||...|| ..|||
BL01251___che 179 TGAACGGAAAAGAAACGTT--GAAAAGGATTATGGCGAGCGATCCGCTT- 225
BSNT_02676___ 226 CCGGTCATTATGGTGTCTAGCCAGACCGAGAAAGGTAAAGA-ATGCACAA 274
|||||..|.|||||.||.||||.|||..||.|.||...||| || |||.|
BL01251___che 226 CCGGTTGTCATGGTATCGAGCCTGACGCAGCAGGGAGCAGATAT-CACGA 274
BSNT_02676___ 275 TTAATTGTTTGGAGATCGGTGCCTTTGACTTTATCACAAAGCCATCAGGT 324
|..|.|||.|||||.|.||.||..|.||.||..||.|.|||||.||.|||
BL01251___che 275 TCGAATGTCTGGAGCTTGGGGCGATCGATTTCGTCGCGAAGCCGTCGGGT 324
BSNT_02676___ 325 TCAATATCTCTGGATCTATACAAAATTAAAGA-ACA-----ATT----AG 364
||.||.||..|.|||.||||.|||.| |||| ||| ||| ||
BL01251___che 325 TCGATTTCAATAGATTTATATAAAGT--AAGAGACATGCTGATTGAGAAG 372
BSNT_02676___ 365 ---TTGAGCGTGTCGTCGCGGCAGGACTTTCCG---------GCAAG--C 400
|||| |.|||||| || |.||| |
BL01251___che 373 GTTTTGA-----------CAGCAGGA-----CGGGTGAAACTGAAAGGCC 406
BSNT_02676___ 401 GGAAACGTCCTGTTTC----CCAGACAGTTCG-GCC--CGAA----CCTA 439
||.||..|||..|.|| ||.|.|| ||| |.| |||| ||.|
BL01251___che 407 GGCAAGTTCCGATCTCAAAGCCCGCCA--TCGAGACGGCGAAGCAGCCGA 454
BSNT_02676___ 440 TTGT--GCGTGCTGTCG-TTAAGCCTGAATTAAGCAAACCGAAACCTGGC 486
|||| ||| ||.| || ||.||.|.|..||
BL01251___che 455 TTGTGGGCG-GCAG-CGATTCAGTCCGCTTT------------------- 483
BSNT_02676___ 487 ACGGGC----AGACAAATTGTGTGTATCGGCACATCAACAGGCGGTCCAC 532
||||| |.|||..|..|.||.|||||.|||||.|||||.||.||..
BL01251___che 484 -CGGGCTGGAAAACAGCTCATCTGCATCGGTACATCGACAGGGGGGCCGA 532
BSNT_02676___ 533 GAGCGTTACAAAAGGTGATACCGAAGCTCCCTAAAGATTTGAACGCACCA 582
|.|||.|.||||..|||.|.||.|||||.||.|||...|||||.||.||.
BL01251___che 533 GGGCGCTGCAAAGAGTGCTTCCCAAGCTTCCCAAAACGTTGAAGGCGCCT 582
BSNT_02676___ 583 GTGGTTGTCGTTCAGCACATGCCTGAAGGG-TTTACTGCTTCTTTGGCTG 631
||..||.|||||||||||||||| .||||| |||||.||.||.||.|| |
BL01251___che 583 GTTTTTATCGTTCAGCACATGCC-AAAGGGCTTTACGGCCTCATTAGC-G 630
BSNT_02676___ 632 ATC-GGCTGAATCATTTATCTGACATTCAG-----GTAAAAGAAGCAAAA 675
|.| |||||||.||..|.||.|| || ||.||.||.||..||
BL01251___che 631 AACAGGCTGAACCACCTCTCAGA-----AGTAACCGTGAAGGAGGCTGAA 675
BSNT_02676___ 676 GATGGTGA---AGC---AGCTCTTAACGGCTGTGTTTACATAGCACCGGG 719
.|.||||| ||| || |||||||.||||||||.|||||.||
BL01251___che 676 AACGGTGAGAGAGCGAAAG------ACGGCTGGGTTTACATTGCACCCGG 719
BSNT_02676___ 720 CGGAAAAAACATATC---CGTTATTAAAAACAGCGAAGGACTCCAGGTTG 766
.|||||||||||..| ||...||.||||..||||| |||
BL01251___che 720 AGGAAAAAACATGGCGGTCGGCCTTGAAAAGGGCGAA----------TTG 759
BSNT_02676___ 767 -------TGCTTGATAACCATGACACCCCAAGCCGTCATAAACCATCTGC 809
.|||.|||.|||..|||||...||||||.||.||.||.||||.
BL01251___che 760 GTGATCACGCTCGATGACCGCGACACAGAAAGCCGCCACAAGCCTTCTGT 809
BSNT_02676___ 810 TGATTATTTATTCCGTT--CTG--------TCGGGAAACTGACAGATTAT 849
|||.||.||.||.|..| ||| |||| ||.|.|
BL01251___che 810 TGACTACTTGTTTCAATCCCTGGCCTCACTTCGG----------GAGTTT 849
BSNT_02676___ 850 GAAAAAGTAGCGGTTATCATGACCGGAATGGGCAGTGACGGCACTGCTGG 899
||||||.|.||.||.||.|||||.||.|||||.||.|||||.||.|..||
BL01251___che 850 GAAAAAATCGCCGTCATTATGACGGGGATGGGAAGCGACGGAACAGAAGG 899
BSNT_02676___ 900 GCTAAAGG----------ACATGCTAACAGCCGGCAATGTGA------AA 933
..||||.| |||||..| .|||.|..|||| ||
BL01251___che 900 CGTAAAAGGCCTTTTGAAACATGGGA----GCGGAACGGTGATCGCCGAA 945
BSNT_02676___ 934 GCCATTGCGGAGTCTGAAGAATCTTGT--GTCGTATACGGGATGCCAAAA 981
|| .||.||||| || |||||.|.|||.|||||.|||
BL01251___che 946 GC---AGCCGAGTC-----------GTCCGTCGTTTTCGGAATGCCGAAA 981
BSNT_02676___ 982 GCTGCTGTTAA-AGCGGGTCTCATTC--ATGAGATTAAACATGTGGAAGA 1028
.|.|...|||| |.|||| |.|.| |.||.||.||.|||||.||.||
BL01251___che 982 TCGGTCATTAACAACGGG---CTTGCAAACGACATCAAGCATGTTGATGA 1028
BSNT_02676___ 1029 TATCGCAGCATCCATCACAAGCTGTGTGAAAAAAGAGAGGGTGTGA 1074
.||.||.|||.||||.|..|..|.|.|||||||||||||||.||||
BL01251___che 1029 GATTGCCGCAGCCATTATGACGTATATGAAAAAAGAGAGGGCGTGA 1074
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