Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02677 and BL01250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_02677___cheA.1.5803.seq
# -bsequence dna-align/BL01250___cheA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02677___cheA-BL01250___cheA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02677___cheA-BL01250___cheA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02677___cheA
# 2: BL01250___cheA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2109
# Identity: 1499/2109 (71.1%)
# Similarity: 1499/2109 (71.1%)
# Gaps: 177/2109 ( 8.4%)
# Score: 5229.5
#
#
#=======================================
BSNT_02677___ 1 ATGGATATGAATCAGTATTTAGATGTCTTTATTGATGAGAGTAAAGAACA 50
||||||||||||||.||||||||.|||||||||||.||.||.|.||||||
BL01250___che 1 ATGGATATGAATCAATATTTAGACGTCTTTATTGAAGAAAGCAGAGAACA 50
BSNT_02677___ 51 TTTACAAACATGTAATGAAAAGCTTCT-----TCTTTTAGAGAAAGACCC 95
|||.|||||.|||||.|||||..|.|| || ||.|||.|.||
BL01250___che 51 TTTGCAAACCTGTAACGAAAAATTGCTCGAACTC-----GAAAAAAATCC 95
BSNT_02677___ 96 GACTGATCTT-CAGCTCGTACATGATATATTCAGGGCTGCCCATACATTA 144
|||.|| ||| |||||.||.||||||||.|||||.||.||.|||||.||.
BL01250___che 96 GACAGA-CTTGCAGCTTGTCCATGATATTTTCAGAGCGGCTCATACCTTG 144
BSNT_02677___ 145 AAAGGAATGAGCGCAACGATGGGCT------ACACGG---ATTTA--GCA 183
|||||.||||||||||||||||||| |||.|| ||||| |||
BL01250___che 145 AAAGGGATGAGCGCAACGATGGGCTATGAAGACATGGCTCATTTAACGCA 194
BSNT_02677___ 184 CACCTAACCCATCTGCTTGAAAACGTGCTGGATGC-ATTCCGAAACGGAG 232
|| .|||| ||||||||||||||||| ||| |||||.|.||
BL01250___che 195 CA--------GTCTG---GAAAACGTGCTGGATGCGATT-CGAAATGAAG 232
BSNT_02677___ 233 ACATGGCAGTCACCTCAGACTGGCTGGATATTTTGTTTGAAGCTCTGGAT 282
|.|||.|..||||.|||||.|||.||||..|..||||||||||.||.|||
BL01250___che 233 AAATGACCATCACGTCAGAGTGGATGGACGTCATGTTTGAAGCGCTCGAT 282
BSNT_02677___ 283 CACCTGGAAGCAATGGTTCAGTCTATTATTGATGGCGGGGATGGTAAAAG 332
.||||.||||||||.||.|..||.||.||.||.|||||.||.||.|||||
BL01250___che 283 GACCTTGAAGCAATCGTCCTTTCGATCATCGAAGGCGGCGACGGCAAAAG 332
BSNT_02677___ 333 AGATATCTCAGAAGTGAGTGCCAAGCTTGATGTGAATGGTGCGCACGCTG 382
||||.|.||.|||||..|.||||||||||||||||..||.||..||...|
BL01250___che 333 AGATGTTTCCGAAGTCTGCGCCAAGCTTGATGTGACAGGGGCAAACAAGG 382
BSNT_02677___ 383 AATCCGCTGCCTCCGCGGAACTTGCAGAAGCAC----AGAG-----TTCA 423
| .||.||..|.||| ||||||||.| ||.| |||.
BL01250___che 383 A---GGCGGCAGCAGCG------GCAGAAGCGCCTGAAGCGGCGTCTTCC 423
BSNT_02677___ 424 GCATCTGATTGGGAATATGATGAATTTGAACGTACAGTTATACAAGAAGC 473
|.|.|..|.|||...|||||.||||||.||||.||.||.||....|||||
BL01250___che 424 GAAACGAAATGGTCCTATGACGAATTTCAACGAACGGTCATCGCCGAAGC 473
BSNT_02677___ 474 GGAGGAGCAAGGCTTCAAACGATATGAAATCAAGATTTCTCTGAACGAAA 523
.|||||.||||||||.|||.|.|..||||||||..||.|..||||.||..
BL01250___che 474 TGAGGAACAAGGCTTTAAATGTTTCGAAATCAAAGTTGCATTGAAAGAGG 523
BSNT_02677___ 524 ACTGTATGTTAAAAGCAGTTCGTGTCTATATGGTGTTTGAAAAACTAAAT 573
|||||.||||.||.|..|||||.||.||.|||||.|||||..|.||.||.
BL01250___che 524 ACTGTCTGTTGAAGGGCGTTCGGGTGTACATGGTATTTGAGCAGCTGAAC 573
BSNT_02677___ 574 GAAGTCGGAGAAGTAGCCAAAACAATTCC---AAGTGCTGAAGTGCTTGA 620
||.|||||.|||||.|..|||||.||||| || |.|||||.|||||
BL01250___che 574 GAGGTCGGCGAAGTCGTTAAAACGATTCCGGAAA---CAGAAGTCCTTGA 620
BSNT_02677___ 621 AACGGAAGATTTTGGAACTGATTT--TCAAGTTTGTTTCTTAACACATCA 668
|.||||.|||||||...|.||.|| ||| |.||.||.||| |.||
BL01250___che 621 ATCGGAGGATTTTGATTCCGAATTCGTCA--TCTGCTTTTTA----AGCA 664
BSNT_02677___ 669 ATCAGCGGA-------AGACATTGAACAATTAATCAATGGCGTGTCGGAA 711
|.|| |||| |||..||.||||| ||||||.|||||.||.|||
BL01250___che 665 AACA-CGGAAAAGAAGAGATTTTCAACAA--AATCAACGGCGTATCTGAA 711
BSNT_02677___ 712 ATTGAGCATGTTGAAGTCATTCAAGGGGCTCCTTTAACATCAGCCGAAAA 761
|||||..|..|.|||||.| || .|||.|||||
BL01250___che 712 ATTGAAAAAATAGAAGTGA-----------CC--------GAGCTGAAAA 742
BSNT_02677___ 762 ----------GCCTGAAGAATCTAAGCAAGAAGATTCACCAGCAGCAGCT 801
|.|..||||| .|||| |||| ||.||.|||
BL01250___che 743 ACGATTTTTCGGCACAAGAA--GAAGC--GAAG-----CCCGCCGCA--- 780
BSNT_02677___ 802 GTACCTGCGAA---------GCA-----------GGAGAAACAA------ 825
|.|||| ||| |||||||.||
BL01250___che 781 -----TCCGAAAAAGAAACCGCACCGAAAGAGGCGGAGAAAAAACCGGCT 825
BSNT_02677___ 826 AAACAGC----CTGCTAAAAACGATGA-GCAGGCGAAGCAT---TCAGCC 867
||.|||| |.||.||||| || || ||||||.|.| .|||.|
BL01250___che 826 AAGCAGCCGGACGGCAAAAAA----GACGC-GGCGAAACCTGCGGCAGGC 870
BSNT_02677___ 868 GGCGGATCTAAAACAATTCGTGTCAACATTGACAGGCTTGATTCTTTAAT 917
||||||.|.||.||.||.||.||||||||.|||.|.||.|||||.|||||
BL01250___che 871 GGCGGAACGAAGACGATCCGCGTCAACATCGACCGCCTCGATTCATTAAT 920
BSNT_02677___ 918 GAACTTATTTGAAGAGCTTGTCATTGACCGCGGGCGTCTCGAGCAGATTG 967
||||.|.|||||||||||.|||||||||.|.|||||..|.||||||||.|
BL01250___che 921 GAACCTGTTTGAAGAGCTGGTCATTGACAGGGGGCGCTTAGAGCAGATCG 970
BSNT_02677___ 968 CGAAAGAGCTTGAGCACAATGAACTGACTGAAACGGTTGAACGAATGACG 1017
|.||||||||.||.||||..|||.|.||.|||||.||.|||||.|||||.
BL01250___che 971 CCAAAGAGCTAGAACACAGCGAATTAACGGAAACCGTCGAACGGATGACT 1020
BSNT_02677___ 1018 AGAATTTCCGGAGATTTGCAATCGATTATTCTGAATATGAGAATGGTCCC 1067
||||||||.||.||..||||.|||||.||.||.||||||||||||||.||
BL01250___che 1021 AGAATTTCAGGCGACCTGCAGTCGATCATCCTCAATATGAGAATGGTTCC 1070
BSNT_02677___ 1068 GGTTGAAACTGTTTTTAACAGATTCCCGAGAATGATTCGCCAGCT-TCAG 1116
|||.|||||.||.||.|||.||||||||.|.|||.|.|||||||| .||
BL01250___che 1071 GGTAGAAACGGTGTTCAACCGATTCCCGCGCATGGTCCGCCAGCTGACA- 1119
BSNT_02677___ 1117 AAAGAGCTGAATAAAAAAATTGAACTCTCGATCATCGGTGCGGAAACTGA 1166
|||||..|.||||||||.||.||.||.|||||..||||.||||||||.||
BL01250___che 1120 AAAGAATTAAATAAAAAGATCGAGCTGTCGATTTTCGGAGCGGAAACAGA 1169
BSNT_02677___ 1167 ACTGGATCGTACAGTAATTGATGAAATCGGAGATCCACTCGTTCACTTGA 1216
.||.||..|.||.|||||.||.||||||||.||.||.||.||.|||.|..
BL01250___che 1170 GCTTGACAGAACGGTAATAGACGAAATCGGCGACCCGCTTGTCCACCTCT 1219
BSNT_02677___ 1217 TCAGAAACAGTATTGACCATGGTATCGAGGCGCCGGAA-ACACGTTTGCA 1265
|.||||||||..||||.||.||.|||||||||||.||| .|| |..||.|
BL01250___che 1220 TGAGAAACAGCCTTGATCACGGGATCGAGGCGCCTGAAGTCA-GGGTGAA 1268
BSNT_02677___ 1266 AAAGGGAAAACCGGAATCAGGAAAAGTTGTGCTTAAAGCTTATCACAGCG 1315
|||.||.|||||.|||.|.||..||||....||.|||||.||.|||||||
BL01250___che 1269 AAACGGTAAACCTGAAACCGGTCAAGTCCGCCTGAAAGCATACCACAGCG 1318
BSNT_02677___ 1316 GCAACCATGTCTTTATCGAAGTAGAGGATGACGGCGCAGGCCTTAATCGC 1365
|.|||||||||||||||||.||.||||||||||||||.|||.|.||.|||
BL01250___che 1319 GTAACCATGTCTTTATCGAGGTGGAGGATGACGGCGCCGGCATCAACCGC 1368
BSNT_02677___ 1366 AAAAAAATTCTGGAAAAAGCGCTTGAGCGCGGGGTCATAACGGAAAAAGA 1415
|||||..|.||.||||||||||||||||||...|||||.||.|||...||
BL01250___che 1369 AAAAAGGTGCTCGAAAAAGCGCTTGAGCGCAACGTCATTACTGAACGCGA 1418
BSNT_02677___ 1416 AGCTGAAACCTTAGAAGACAACCAAATTTACGAATTGATTTTTGCTCCGG 1465
|||.|||||..|.|||||..|..||||..|||...|.||||||||.||||
BL01250___che 1419 AGCCGAAACGATCGAAGATCATGAAATCGACGCGCTCATTTTTGCGCCGG 1468
BSNT_02677___ 1466 GGTTCTCAACTGCTGACCAAATTTCTGATATTTCCGGCCGCGGTGTAGGA 1515
|.||||||||.||.||.|||||.||.||||||||.||.|||||.||.||
BL01250___che 1469 GATTCTCAACCGCAGATCAAATCTCGGATATTTCAGGACGCGGAGTCGG- 1517
BSNT_02677___ 1516 CTT-GACGTTGTAAAAAACAAACTGGAGTCTCTTGGCGGTTCAGTCAGTG 1564
||| ||||||||.||||.|||.|||||.||..|.||||||||.|||||..
BL01250___che 1518 CTTAGACGTTGTCAAAAGCAAGCTGGAATCGTTGGGCGGTTCTGTCAGCA 1567
BSNT_02677___ 1565 TGAAATC-AGCCGAGGGTCAAGGCTCTCTATTCAGCATCCAGCTGCCGCT 1613
|.||||| || |||.||..||||.||.||.|||..|||||||||.|||||
BL01250___che 1568 TCAAATCGAG-CGAAGGCGAAGGTTCGCTTTTCTCCATCCAGCTTCCGCT 1616
BSNT_02677___ 1614 TACCTTGTCTATTATTTCAGTTCTGCTGATTAAGTTGGAAGAAGAGATAT 1663
|||..||||.||.|||||.||.|||.|..|.||..|.|||.|.||.|..|
BL01250___che 1617 TACACTGTCGATCATTTCCGTGCTGTTAGTCAAACTTGAAAATGAAACGT 1666
BSNT_02677___ 1664 TTGCCATTCCGATTTCTTCAATCATTGAGACAGCAGTTATTGACAGAAAA 1713
||||.||||||||||||||.||.||.||.||.||.||.||.||.|..|||
BL01250___che 1667 TTGCGATTCCGATTTCTTCTATTATAGAAACGGCTGTCATCGATAAGAAA 1716
BSNT_02677___ 1714 GACATTTTGCAAACGCATGACCGTGAAGTGATTGACTTTAGAGGGCATAT 1763
||.|||.|.||||||||.|||||.||||||||.||.||.||.||.|||||
BL01250___che 1717 GATATTCTTCAAACGCACGACCGCGAAGTGATCGATTTCAGGGGCCATAT 1766
BSNT_02677___ 1764 TGTCCCTGTCGTTTATTTAAAAGAAGAGTTTAAAATAGAAGATACAAGAA 1813
.||.||.||.|||||..|.||||||.|||||||..|.||.|||.|...|.
BL01250___che 1767 CGTACCGGTGGTTTACCTGAAAGAACAGTTTAATGTTGAGGATTCTTCAG 1816
BSNT_02677___ 1814 AAGATGCGGAACAGCTCCATATCATTGTCGTGAAAAAAGGCGACAAACCT 1863
|.|||...||.|||||.||..||||.||||||||||||||.|||||.|..
BL01250___che 1817 ATGATCTTGATCAGCTTCACGTCATCGTCGTGAAAAAAGGAGACAAGCTG 1866
BSNT_02677___ 1864 ACTGCATTTGTGGTGGACTCCTTTATTGGCCAGCAGGAAGTTGTGCTGAA 1913
||.||||||||.||.|||||||||||.||||||||||||||.||..|.||
BL01250___che 1867 ACGGCATTTGTTGTCGACTCCTTTATCGGCCAGCAGGAAGTCGTATTAAA 1916
BSNT_02677___ 1914 ATCACTCGGAGATTATTTAACAAACGTCTTTGCAATTTCCGGAGCTACTA 1963
|||||||||.|||||||||||||||||||||||.||||||||.||.||.|
BL01250___che 1917 ATCACTCGGCGATTATTTAACAAACGTCTTTGCCATTTCCGGCGCGACGA 1966
BSNT_02677___ 1964 TTTTAGGAGACGGAGAAGTAGCGCTCATTATTGATTGTAATGCACTGATT 2013
||||.|||||||||.|||||||.||.||.||.||.||.||.||.| ||
BL01250___che 1967 TTTTGGGAGACGGACAAGTAGCCCTGATCATCGACTGCAACGCCC---TT 2013
BSNT_02677___ 2014 ATTTAA--- 2019
|||.||
BL01250___che 2014 ATTAAATAG 2022
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