Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02678 and BL01249
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_02678___cheW.1.5803.seq
# -bsequence dna-align/BL01249___cheW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02678___cheW-BL01249___cheW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02678___cheW-BL01249___cheW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02678___cheW
# 2: BL01249___cheW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 508
# Identity: 331/508 (65.2%)
# Similarity: 331/508 (65.2%)
# Gaps: 68/508 (13.4%)
# Score: 1012.0
#
#
#=======================================
BSNT_02678___ 1 ATGACTGCAGAAATTAAAACAGGCGAAAAAATGATAGTCTTTATGGTAAA 50
.||||..||.|.|.||..||.||.||.||||||||.||.||.|..|||||
BL01249___che 1 TTGACCACACAGACTACCACCGGTGAGAAAATGATTGTGTTCAAAGTAAA 50
BSNT_02678___ 51 TGGCAAAGAATATGCCATTTCCGTCACTCAG--GTGAAATCAATTGAAAA 98
|...|||||.||||||||.||.|| .|||| ||.|..||.||||||||
BL01249___che 51 TCATAAAGAGTATGCCATCTCTGT--ATCAGAAGTAATGTCCATTGAAAA 98
BSNT_02678___ 99 ATGGCAAAAGCCAACGAGGGTACCTGGCGTCGAACCATATATTTGCGGGG 148
||||||..|||||||.|||||.||.||.||.|||||.|||||||||||.|
BL01249___che 99 ATGGCAGCAGCCAACAAGGGTGCCGGGAGTGGAACCGTATATTTGCGGCG 148
BSNT_02678___ 149 TAATCAATTTACGCGGGGTGGTGACTCCGGTTATTGATTTAAGAAAACGC 198
|.||.|||||..|.||.||.||.||.||.||.||.|||||||||||.||
BL01249___che 149 TCATTAATTTGAGAGGTGTTGTCACACCTGTCATCGATTTAAGAAAGCG- 197
BSNT_02678___ 199 CTGAATTTGCCAGAGTATGAA------ATTACCGATGAAACACGAATTAT 242
|| ||| .||.|..||.| |||||.||||||||..||||.||
BL01249___che 198 --GA--TTG-AAGCGCCTGGAGACACGATTACTGATGAAACGAGAATCAT 242
BSNT_02678___ 243 CATTATTGCTTATCGTGATATTGAAGTCGGCTGGATTGTGGATGAAGCGA 292
|||.||..|..|||..||.|||||||||||||||.|.||||||||.||||
BL01249___che 243 CATCATCACCCATCAGGACATTGAAGTCGGCTGGGTGGTGGATGAGGCGA 292
BSNT_02678___ 293 ACGATGTGATTACCGTACACGAA-AGTGAAATAGAATCTGCTCCAGAAGG 341
|||||||.||.||.||..|.||| || |||||.|||||.|||||.|||..
BL01249___che 293 ACGATGTCATCACAGTCGAGGAAGAG-GAAATTGAATCGGCTCCCGAAAC 341
BSNT_02678___ 342 CGTTCAGAAAGATACGG------ATGTGTCGATCGAACAGATTGTGAAAC 385
.|| ||.||.|.|||| ||| |||..||...||.||.||.|
BL01249___che 342 GGT--AGGAAAAGACGGCAGGCAATG----GATTAAAGGCATCGTCAAGC 385
BSNT_02678___ 386 AAGAGAACAGACTCTTAAATATTATTGA-TGCGAACGCGGTTTTGGATAA 434
|||.|..||||||..|.|||.|.||||| |..||| ||.|||| |||
BL01249___che 386 AAGGGTCCAGACTTCTCAATCTGATTGACTCTGAA-GCTGTTT----TAA 430
BSNT_02678___ 435 A---GAATCATCTCAGTC-CGCTGTGC--CCGATCAAGCTTAA------- 471
| || |||| .||..||| |||.| .||.||
BL01249___che 431 ACCGGA--------AGTCGAGCCTTGCCGCCGCT---TCTGAAAATGTGA 469
BSNT_02678___ 471 -------- 471
BL01249___che 470 AGAAATAA 477
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