Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02690 and BL01239

See Amino acid alignment / Visit BSNT_02690 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence dna-align/BSNT_02690___uppS.1.5803.seq
#    -bsequence dna-align/BL01239___uppS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02690___uppS-BL01239___uppS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02690___uppS-BL01239___uppS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02690___uppS
# 2: BL01239___uppS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 788
# Identity:     593/788 (75.3%)
# Similarity:   593/788 (75.3%)
# Gaps:          10/788 ( 1.3%)
# Score: 2163.0
# 
#
#=======================================

BSNT_02690___      1 ATGCTCAACATACTCAAAAATTGGAAGAATCAGCAAACTGCGGCTTCCAA     50
                     ||||||||.||||||||||||||||||||||||||..|.||.||||||||
BL01239___upp      1 ATGCTCAATATACTCAAAAATTGGAAGAATCAGCATTCGGCTGCTTCCAA     50

BSNT_02690___     51 CTTAGAACGTTATACAAAAGAAGACATACTTAAGGGAGAAATTCCCGAAC    100
                     |.|.|||.||||.|||||||||.|.||..|.||.|||||||||||.||||
BL01239___upp     51 CATGGAATGTTACACAAAAGAAAATATTTTAAAAGGAGAAATTCCTGAAC    100

BSNT_02690___    101 ACATCGCCATTATCATGGATGGAAATGGCCGTTGGGCTAAAAAACGCTCT    150
                     |.|||||||||||.|||||.|||||.|||||.|||||.||.||.||..|.
BL01239___upp    101 ATATCGCCATTATTATGGACGGAAACGGCCGCTGGGCAAAGAAGCGGGCG    150

BSNT_02690___    151 CTTCCCAGAATTGCAGGCCACCATGAAGGGATGAAGGTGGTAAAAAGGAC    200
                     .|.|||.|.||.||.||.||.||.|||||.|||||.|||||.|.|..|||
BL01239___upp    151 ATGCCCCGCATCGCGGGTCATCACGAAGGCATGAAAGTGGTCAGACAGAC    200

BSNT_02690___    201 CACGAAGCTCGCAAACGAATTAGGTGTCAAAGTACTGACATTGTATGCAT    250
                     .||.|||||.||.||.||..|.||||||||||...||||..|||||||.|
BL01239___upp    201 GACAAAGCTTGCCAATGAGCTCGGTGTCAAAGCGTTGACGCTGTATGCCT    250

BSNT_02690___    251 TTTCAACAGAAAACTGGAAAAGACCGAAAATGGAAGTCGATTTTTTAATG    300
                     ||||.||.|||||.|||||..|.||.||..|.||.||.||.|||.|.|||
BL01239___upp    251 TTTCGACGGAAAATTGGAAGCGTCCAAAGCTTGAGGTTGACTTTCTGATG    300

BSNT_02690___    301 AAGCTTCCGGAAGAATTTTTGAATACGTATCTTCCAGAGCTTGTTGAGGA    350
                     |||||.||.|||||.|||.||...||||||||.||.|||||.||.||.||
BL01239___upp    301 AAGCTGCCTGAAGAGTTTCTGGGAACGTATCTCCCGGAGCTGGTCGAAGA    350

BSNT_02690___    351 AAATGTACAGGTTCGGATCATTGGGGAT--GAAACGGCTTTGCCGGCGCA    398
                     ||||||.|.|||.||.||.|..||.|||  |.||.|.|  |||||.|.||
BL01239___upp    351 AAATGTCCGGGTCCGCATGACAGGCGATAGGGAAGGAC--TGCCGCCCCA    398

BSNT_02690___    399 CACATTACGTGCGATTGAAAAAGCTGTACAGGACACGGCGCAAAACGACG    448
                     |||..|.||.|||.||||||||||..|.|..||.||||.|.|.||.||||
BL01239___upp    399 CACGATCCGCGCGGTTGAAAAAGCCATCCGTGATACGGAGAACAATGACG    448

BSNT_02690___    449 GAATGATCCTTAATTTTGCTCTTAACTATGGAGGCCGTACTGAAATTGTC    498
                     ||.|.||.|||||||||||..|.||.||.||.||.|||.|.|||||.|||
BL01239___upp    449 GACTTATTCTTAATTTTGCATTGAATTACGGGGGACGTGCAGAAATCGTC    498

BSNT_02690___    499 AGTGCTGCAAAATCACTCGCGGAAAAAGTGAAGGAAGGCTCTTTGAATAT    548
                     ||.||.|||||...|.|.||.|||.|||..||..|||||.|.|||||||.
BL01239___upp    499 AGAGCCGCAAAGAAAATTGCCGAAGAAGCCAAAAAAGGCACATTGAATAC    548

BSNT_02690___    549 TGAAGACATTGATGAATCGCTTTTTTCTACTTATTTGATGACTGAATCTT    598
                     .||.||.||.||.|||..|||.|||||...||||||.|||||.|||.|||
BL01239___upp    549 CGAGGAAATCGACGAAAAGCTATTTTCCGATTATTTAATGACAGAAACTT    598

BSNT_02690___    599 TGCAGGATCCTGAACTTT--TAATTCGAACGAGCGGCGAGATAAGGCTGA    646
                     |||||||.|||||  |||  |.|||||.||.|||||||||||.|||||||
BL01239___upp    599 TGCAGGACCCTGA--TTTGCTGATTCGCACAAGCGGCGAGATCAGGCTGA    646

BSNT_02690___    647 GTAATTTTATGCTATGGCAGGTTGCCTACAGTGAATTTGTCTTTACTGAC    696
                     |.||.||.|||||.||||||.||||||||||.||||||.|.|||||.||.
BL01239___upp    647 GCAACTTCATGCTTTGGCAGCTTGCCTACAGCGAATTTTTATTTACCGAT    696

BSNT_02690___    697 GTCTTGTGGCCTGACTTTAAAGAAGATCACTT-CTTGCAGGCGTTAGGAG    745
                     ||.|||||||||||.||||||||.|.|||||| ||| |||||..|.||||
BL01239___upp    697 GTATTGTGGCCTGATTTTAAAGACGTTCACTTGCTT-CAGGCTATCGGAG    745

BSNT_02690___    746 AGTTTCAGCAGAGAGGCCGGAGGTTTGGCGGAATTTAG    783
                     |.|.|||||...|.||..|.||||||||||||||||||
BL01239___upp    746 AATATCAGCGTCGCGGGAGAAGGTTTGGCGGAATTTAG    783


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