Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02694 and BL01236
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_02694___yluC.1.5803.seq
# -bsequence dna-align/BL01236___yluC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02694___yluC-BL01236___yluC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02694___yluC-BL01236___yluC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02694___yluC
# 2: BL01236___yluC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1308
# Identity: 959/1308 (73.3%)
# Similarity: 959/1308 (73.3%)
# Gaps: 93/1308 ( 7.1%)
# Score: 3487.0
#
#
#=======================================
BSNT_02694___ 1 GTGAATACAGTTATAGCGTTTATCATTATTTTCGGAACGCTCGTTTTCTT 50
||||||||.||.||.||||||||..|||||||.|||||||||||.||.||
BL01236___ylu 1 GTGAATACTGTGATCGCGTTTATTCTTATTTTTGGAACGCTCGTATTTTT 50
BSNT_02694___ 51 CCATGAACTGGGCCATTTATTGCTAGCCCAAAGAGCGGGAATTCTCTGCC 100
||||||.||.||.|||.|..|.||.||.||||||||.|||||.||.||||
BL01236___ylu 51 CCATGAGCTTGGTCATCTCATCCTTGCTCAAAGAGCCGGAATACTGTGCC 100
BSNT_02694___ 101 GTGAATTTGCGATCGGCTTCGGTCCAAAGATTTTTTCTTTCAAAAAAAAT 150
|.||.|||||.||||||||||||||.||.||.|||||.||.||.||||||
BL01236___ylu 101 GGGAGTTTGCTATCGGCTTCGGTCCGAAAATCTTTTCGTTTAAGAAAAAT 150
BSNT_02694___ 151 GAAACAGTTTATACGATCAGGCTGCTTCCGGTCGGCGGATTTGTTCGTAT 200
||.||.|||||||||||||||||.||||||.|||||||.|||||..|.||
BL01236___ylu 151 GAGACCGTTTATACGATCAGGCTTCTTCCGATCGGCGGCTTTGTCAGAAT 200
BSNT_02694___ 201 GGCCGGCGAAGATCCGGAAATGATTGAGGTGAAACCCGGATACACGGTCG 250
|||||||||||||||.||.||||||||.|||||.|||||.||.|||||||
BL01236___ylu 201 GGCCGGCGAAGATCCTGAGATGATTGAAGTGAAGCCCGGTTATACGGTCG 250
BSNT_02694___ 251 GGCTTCTGTTTAATAAGGAAGATCAA-GTTGAGAAAG-TCATCATCAATC 298
||||..||||..|.|..||| |.||| ||.|| |||| ||||.|||||.|
BL01236___ylu 251 GGCTGTTGTTCGACAGCGAA-AACAAGGTCGA-AAAGATCATTATCAACC 298
BSNT_02694___ 299 AAAAGGAAAAATATCCGGATGCTTTAGTCATTGAAGTGGAAACA-GCGGA 347
||||.|||||.|||||.||.||.||.||||||||||||| |.|| ||.||
BL01236___ylu 299 AAAAAGAAAAGTATCCCGACGCATTGGTCATTGAAGTGG-AGCAGGCCGA 347
BSNT_02694___ 348 TTTAGAGCATGACATGAAGATCACCGGTTATGAACAGGGGAAAGAGGACG 397
..|.|||||..|.||||.|||.||.||.|||||.||.||.||.||.||..
BL01236___ylu 348 CCTGGAGCACCAGATGAGGATTACGGGCTATGAGCACGGCAATGAAGATC 397
BSNT_02694___ 398 AACTTTC--CAGCTTTACTGTCAGCGAAACATCCTTTTTTATTGTAGACG 445
|.||.|| || |||.|||||||.|||||.||||||||.||.|||||||
BL01236___ylu 398 ATCTCTCTTCA--TTTTCTGTCAGTGAAACGTCCTTTTTCATCGTAGACG 445
BSNT_02694___ 446 GAGAAGAAGTGCAGATTGCGCCGTATAATCGCCAATTTGGTTCCAAACCT 495
|.||||||||.|||||.||.||.||.||.|||||||||..|||.|||.|.
BL01236___ylu 446 GGGAAGAAGTCCAGATCGCTCCTTACAACCGCCAATTTCATTCGAAAACG 495
BSNT_02694___ 496 GTGTGGCAGCGGATTAAAGCAATTGCTGCAGGGCCGATTATGAACTTTAT 545
||.||||||||.||.|||||.||||||||.||.|||||.|||||||||||
BL01236___ylu 496 GTTTGGCAGCGCATCAAAGCGATTGCTGCCGGACCGATCATGAACTTTAT 545
BSNT_02694___ 546 TTTAGCTTACGTCATTTTAGTGATGCTTGGGCTGATTCAAGGCGTACCGT 595
|||.|||||.|||||..|.||||||||.||.|||||.||.||.||.||||
BL01236___ylu 546 TTTGGCTTATGTCATACTCGTGATGCTCGGACTGATGCAGGGAGTGCCGT 595
BSNT_02694___ 596 CAAATGAACCTATGCTCGGGCAGCTGACAGACAATGGACGGGCAGCTGAA 645
|..|.||.||..|||||||..||.|||.||||||.||||||||.||.|||
BL01236___ylu 596 CTGACGAGCCGGTGCTCGGCAAGTTGATAGACAACGGACGGGCGGCGGAA 645
BSNT_02694___ 646 GCAGGGCTAAAAGAAGGGGATTATATCCAAAGCATTAACGGAGAGAAAAT 695
|||||.||..|.||.||.||....||.||||..||.|||||.|||||.||
BL01236___ylu 646 GCAGGCCTCCAGGAGGGAGACCGCATTCAAACGATCAACGGGGAGAACAT 695
BSNT_02694___ 696 GAGGTCTTGGACTGACATTGTCTCCGCTGTAAAAGAAAACCCGGAGAAAG 745
||||||.|||||.||.||||||..|.|.||.|.||||.||||.||.||||
BL01236___ylu 696 GAGGTCGTGGACGGATATTGTCAACACGGTCAGAGAACACCCTGAAAAAG 745
BSNT_02694___ 746 AAATGGA---CGT-----TGCAGTAAAAAG---AGATAACAAAACGCTTC 784
||.||.| ||| |||...|.||.| ||.|.||.|||
BL01236___ylu 746 AACTGAAAATCGTTTTGATGCGCGACAATGTCAAGCTGACGAAA------ 789
BSNT_02694___ 785 ATATTTCGGTGACTCCGGAAGCTGTTAA------AGATGAGAACAAAAAA 828
|..||.||.||.||||||||.|| .|||| ||
BL01236___ylu 790 -----TACGTAACACCTGAAGCTGTCAAGGCAGGGGATG---------AA 825
BSNT_02694___ 829 ACAATCGGACGTTTCGGTTCCTATGCGCCGAC-------TGAAAA-AGGC 870
||..||||..|.|||| ||||..|| |||||| ||||
BL01236___ylu 826 ACCGTCGGCAGATTCG--------GCGCTTACAATCCTGTGAAAACAGGC 867
BSNT_02694___ 871 GTACTCTCAGCGGTTGCTTACGGCGCG------ACATCAACAGTTGATGT 914
||.||..||.||.||.|.|||||.||| ||..|.|||||.|
BL01236___ylu 868 GTTCTGACATCGATTTCCTACGGTGCGACCGAAACGGCGACAGTGG---- 913
BSNT_02694___ 915 CACCAAAGCCATTTTAACCAATCTGAGCAAATTAGTAACAGGCCAATT-T 963
.|||.|| |||..|.||||||||..|.||..|.||.|||||.||||| |
BL01236___ylu 914 -CCCAGAG-CATCGTCACCAATCTCGGAAAGCTCGTCACAGGACAATTCT 961
BSNT_02694___ 964 AAACTCGATATGCTGTCAGGTCCTGTCGGCATATATGACATGACAGACCA 1013
.|| ||||.||||||.|.||||||||||||||.|||||||||||||||||
BL01236___ylu 962 CAA-TCGACATGCTGGCCGGTCCTGTCGGCATTTATGACATGACAGACCA 1010
BSNT_02694___ 1014 AGTGGCGAAAACAGGGATCGTGAATTTAT--------TTCAGTTTGCGGC 1055
||||||.||.||||| || |||| |..||.|.||.||
BL01236___ylu 1011 AGTGGCCAAGACAGG---CG-----TTATCAACCTGCTGAAGCTGGCCGC 1052
BSNT_02694___ 1056 GTTTTTAAGCATTAATCTTGGGATTGTCAACCTGCTTCCGATTCCGGCAC 1105
.|||||||||||.||.||.|||||.||||||||.||.||.||.||.||.|
BL01236___ylu 1053 ATTTTTAAGCATCAACCTCGGGATCGTCAACCTTCTGCCAATCCCTGCGC 1102
BSNT_02694___ 1106 TTGACGGAGGAAGACTGTTGTTTCTATTTATTGAAGCGATTCGGGGCAAA 1155
|.|||||.||||||||||||||.||.||||||||||||||.||.||.||.
BL01236___ylu 1103 TGGACGGCGGAAGACTGTTGTTCCTGTTTATTGAAGCGATCCGCGGGAAG 1152
BSNT_02694___ 1156 CCGATTAACAGGGAAAAAGAAGCATTTGTTGTGTTTATCGGAGTAGCTTT 1205
|||||.|||.|.|||||||||||.|||||.||.||||||||.||.||.||
BL01236___ylu 1153 CCGATCAACCGCGAAAAAGAAGCGTTTGTCGTCTTTATCGGCGTCGCATT 1202
BSNT_02694___ 1206 CTTAATGCTTCTTATGCTGGTTGTCACATGGAACGATATCCAGCGGCTGT 1255
.||.|||||.||.|||||.||.|||||||||||||||||||||||..|.|
BL01236___ylu 1203 TTTGATGCTCCTAATGCTTGTCGTCACATGGAACGATATCCAGCGCTTAT 1252
BSNT_02694___ 1256 TTTTGTAA 1263
||.|||||
BL01236___ylu 1253 TTCTGTAA 1260
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