Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02706 and BL01221

See Amino acid alignment / Visit BSNT_02706 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:26
# Commandline: needle
#    -asequence dna-align/BSNT_02706___rbfA.1.5803.seq
#    -bsequence dna-align/BL01221___rbfA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02706___rbfA-BL01221___rbfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02706___rbfA-BL01221___rbfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02706___rbfA
# 2: BL01221___rbfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 359
# Identity:     280/359 (78.0%)
# Similarity:   280/359 (78.0%)
# Gaps:          16/359 ( 4.5%)
# Score: 1105.0
# 
#
#=======================================

BSNT_02706___      1 ------ATGAGAGCAAACCGTGTCGGCGAGCAAATGAAAAAAGAACTCGG     44
                           ||||||||.|.||||||.||.|||||.||||||||||||||.||
BL01221___rbf      1 ATGACGATGAGAGCTACCCGTGTGGGAGAGCAGATGAAAAAAGAACTTGG     50

BSNT_02706___     45 TGATATTATCAGCCGCAAGCTGAAAGACCCGAGAATTGGTTTTCTGACAG     94
                     |||.||||||.||.|.|||||||||||.|||.||||.||.|||.|.||||
BL01221___rbf     51 TGACATTATCGGCAGAAAGCTGAAAGATCCGCGAATCGGATTTTTAACAG    100

BSNT_02706___     95 TAACGGATGTACGTGTATCAGGTGATTTGCAAATTGCAAAGGTGTATATC    144
                     |.||.||.||..|.||.||||||||||||||||||||.||.||||||||.
BL01221___rbf    101 TCACCGACGTCAGGGTCTCAGGTGATTTGCAAATTGCCAAAGTGTATATT    150

BSNT_02706___    145 TCGGTTCTCGGTGACGAGAAAAAACGGGAAGAAGCGCTGAAAGGGCTGGC    194
                     ||.|||.|.||.||.||.||.||||||||||||.||||.|||||.|||||
BL01221___rbf    151 TCCGTTTTAGGCGATGAAAAGAAACGGGAAGAAACGCTCAAAGGCCTGGC    200

BSNT_02706___    195 AAAAGCGAAAGGATTTATCCGATCCGAAATCGGCAGCCGCATCAGACTTC    244
                     ||||||.||.||.|||||.||.||||||.|.||.|.|||.|||||.||||
BL01221___rbf    201 AAAAGCAAAGGGCTTTATTCGTTCCGAACTTGGAAACCGAATCAGGCTTC    250

BSNT_02706___    245 GAAAAACGCCTGAAATTGAATTTGAGTTCGATGAATCAATCGATTACGGG    294
                     |.|||||.||||||||..|.|||||||||||||||||.|||||||||||.
BL01221___rbf    251 GCAAAACACCTGAAATCCATTTTGAGTTCGATGAATCGATCGATTACGGA    300

BSNT_02706___    295 AATCGGATCGAAACACTGATTCACGA----ATTACATTCAGAGAA-ACCA    339
                     ||.||.|||||||||.||||||||||    |...||..||.|||| |  |
BL01221___rbf    301 AACCGTATCGAAACATTGATTCACGAGCTGAACGCAAACAAAGAAGA--A    348

BSNT_02706___    340 TCTGAATAA    348
                     ||   ||||
BL01221___rbf    349 TC---ATAA    354


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