Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02706 and BL01221
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_02706___rbfA.1.5803.seq
# -bsequence dna-align/BL01221___rbfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02706___rbfA-BL01221___rbfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02706___rbfA-BL01221___rbfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02706___rbfA
# 2: BL01221___rbfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 359
# Identity: 280/359 (78.0%)
# Similarity: 280/359 (78.0%)
# Gaps: 16/359 ( 4.5%)
# Score: 1105.0
#
#
#=======================================
BSNT_02706___ 1 ------ATGAGAGCAAACCGTGTCGGCGAGCAAATGAAAAAAGAACTCGG 44
||||||||.|.||||||.||.|||||.||||||||||||||.||
BL01221___rbf 1 ATGACGATGAGAGCTACCCGTGTGGGAGAGCAGATGAAAAAAGAACTTGG 50
BSNT_02706___ 45 TGATATTATCAGCCGCAAGCTGAAAGACCCGAGAATTGGTTTTCTGACAG 94
|||.||||||.||.|.|||||||||||.|||.||||.||.|||.|.||||
BL01221___rbf 51 TGACATTATCGGCAGAAAGCTGAAAGATCCGCGAATCGGATTTTTAACAG 100
BSNT_02706___ 95 TAACGGATGTACGTGTATCAGGTGATTTGCAAATTGCAAAGGTGTATATC 144
|.||.||.||..|.||.||||||||||||||||||||.||.||||||||.
BL01221___rbf 101 TCACCGACGTCAGGGTCTCAGGTGATTTGCAAATTGCCAAAGTGTATATT 150
BSNT_02706___ 145 TCGGTTCTCGGTGACGAGAAAAAACGGGAAGAAGCGCTGAAAGGGCTGGC 194
||.|||.|.||.||.||.||.||||||||||||.||||.|||||.|||||
BL01221___rbf 151 TCCGTTTTAGGCGATGAAAAGAAACGGGAAGAAACGCTCAAAGGCCTGGC 200
BSNT_02706___ 195 AAAAGCGAAAGGATTTATCCGATCCGAAATCGGCAGCCGCATCAGACTTC 244
||||||.||.||.|||||.||.||||||.|.||.|.|||.|||||.||||
BL01221___rbf 201 AAAAGCAAAGGGCTTTATTCGTTCCGAACTTGGAAACCGAATCAGGCTTC 250
BSNT_02706___ 245 GAAAAACGCCTGAAATTGAATTTGAGTTCGATGAATCAATCGATTACGGG 294
|.|||||.||||||||..|.|||||||||||||||||.|||||||||||.
BL01221___rbf 251 GCAAAACACCTGAAATCCATTTTGAGTTCGATGAATCGATCGATTACGGA 300
BSNT_02706___ 295 AATCGGATCGAAACACTGATTCACGA----ATTACATTCAGAGAA-ACCA 339
||.||.|||||||||.|||||||||| |...||..||.|||| | |
BL01221___rbf 301 AACCGTATCGAAACATTGATTCACGAGCTGAACGCAAACAAAGAAGA--A 348
BSNT_02706___ 340 TCTGAATAA 348
|| ||||
BL01221___rbf 349 TC---ATAA 354
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