Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02709 and BL01217
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:27
# Commandline: needle
# -asequence dna-align/BSNT_02709___pnpA.1.5803.seq
# -bsequence dna-align/BL01217___pnpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02709___pnpA-BL01217___pnpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02709___pnpA-BL01217___pnpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02709___pnpA
# 2: BL01217___pnpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2128
# Identity: 1735/2128 (81.5%)
# Similarity: 1735/2128 (81.5%)
# Gaps: 20/2128 ( 0.9%)
# Score: 7078.0
#
#
#=======================================
BSNT_02709___ 1 ATGGGACAAGAAAAACATGTCTTTACCATAGATTGGGCCGGAAGAACGCT 50
|||||||||||.||||||||||||.||||||||||||||||..|.|.|||
BL01217___pnp 1 ATGGGACAAGAGAAACATGTCTTTTCCATAGATTGGGCCGGCCGCAAGCT 50
BSNT_02709___ 51 TACTGTTGAAACCGGCCAGCTTGCCAAACAGGCAAATGGTGCTGTGATGA 100
.||.||.|||||||||||||||||.|||||.|||||.||.|||||.|||.
BL01217___pnp 51 CACAGTAGAAACCGGCCAGCTTGCAAAACAAGCAAACGGAGCTGTCATGG 100
BSNT_02709___ 101 TCCGCTACGGTGATACAGCAGTACTTAGTACAGCAACCGCTTCAAAAGAA 150
|.||.||.||.||.||.|||||.||.||.||.|||||.||||||||||||
BL01217___pnp 101 TGCGTTATGGAGACACTGCAGTGCTCAGCACCGCAACGGCTTCAAAAGAA 150
BSNT_02709___ 151 CCT-AAACCGCTTGATTTCTTCCCTCTTACTGTAAACTATGAAGAAAGAT 199
||| |||||| |.||.||.|||||..|.||.|||||.||.|||||||||.
BL01217___pnp 151 CCTAAAACCG-TAGACTTTTTCCCGTTAACCGTAAATTACGAAGAAAGAC 199
BSNT_02709___ 200 TATATGCGGTAGGGAAAATTCCGGGCGGATTTATTAAAAGAGAAGGACGT 249
|.||.||.||.||.||.|||||||||||.||||||||||||||.|||.|.
BL01217___pnp 200 TTTACGCCGTCGGAAAGATTCCGGGCGGGTTTATTAAAAGAGAGGGAAGA 249
BSNT_02709___ 250 CCAAGTGAAAAAGCGGTTCTTGCCAGCCGTTTAATTGACCGTCCGATCCG 299
||.||.|||||||||.||||.||||||||.|||||.|||.|.||||||||
BL01217___pnp 250 CCGAGCGAAAAAGCGATTCTCGCCAGCCGGTTAATCGACAGGCCGATCCG 299
BSNT_02709___ 300 TCCTTTGTTTGCCGATGGATTCCGTAATGAAGTTCAAGTCATCAGCATTG 349
.||..||||.||.||.||.|||||.|||||||||||||||.|||||||.|
BL01217___pnp 300 CCCGCTGTTCGCAGACGGCTTCCGGAATGAAGTTCAAGTCGTCAGCATCG 349
BSNT_02709___ 350 TCATGAGTGTTGACCAAAACTGCTCTTCAGAAATGGCTGCCATGTTCGGT 399
|||||||.||||||||..|.||.||.|||||||||||.||.|||||.||.
BL01217___pnp 350 TCATGAGCGTTGACCAGGATTGTTCGTCAGAAATGGCGGCAATGTTTGGA 399
BSNT_02709___ 400 TCATCTCTTGCACTTTCTGTATCGGATATTCCGTTTGAAGGACCGATTGC 449
|||||||||||.||.|..|||||.||.||.|||||||||||.|||||.||
BL01217___pnp 400 TCATCTCTTGCGCTGTGCGTATCCGACATCCCGTTTGAAGGGCCGATCGC 449
BSNT_02709___ 450 AGGGGTTACTGTCGGACGCATTGATGATCAATTTATCATTAACCCGACAG 499
.||.||.||.||.||.||..||||..|..||||.|||||.||.||||||.
BL01217___pnp 450 CGGAGTGACGGTAGGCCGGGTTGACAACAAATTCATCATCAATCCGACAC 499
BSNT_02709___ 500 TCGATCAGCTTGAAAAAAGCGACATCAATCTTGTCGTTGCCGGCACGAAA 549
|.||.||||||||||||||||||||..||||.|||||.||.||.|||||.
BL01217___pnp 500 TTGAACAGCTTGAAAAAAGCGACATTCATCTCGTCGTAGCGGGAACGAAG 549
BSNT_02709___ 550 GATGCGATTAACATGGTAGAAGCGGGAGCGGACGAAGTTCCTGAGGAAAT 599
||.|||||.||||||||.|||||||||||.|||||||||||.||.||.||
BL01217___pnp 550 GACGCGATCAACATGGTTGAAGCGGGAGCAGACGAAGTTCCGGAAGAGAT 599
BSNT_02709___ 600 CATGCTTGAGGCCATTATGTTCGGCCATGAAGAGATTAAACGCCTGATTG 649
|||||||||.||.||.||||||||.||.||.|||||.|||||.|||||||
BL01217___pnp 600 CATGCTTGAAGCGATCATGTTCGGTCACGAGGAGATCAAACGGCTGATTG 649
BSNT_02709___ 650 CATTCCAAGAAGAAATTGTTGCAGCAGTCGGCAAAGAGAAATCTGAAATT 699
|.|||||.||.|||||.||.||.||.|||||.|||||.|||||.|||||.
BL01217___pnp 650 CCTTCCAGGAGGAAATCGTCGCCGCTGTCGGGAAAGAAAAATCAGAAATC 699
BSNT_02709___ 700 AAGCTCTTTGAAATTGATGAAGAGCTTAATGAAAAAGT------AAAAGC 743
|..||.|.|||.||.|||...||.||.||.|||||||| ||
BL01217___pnp 700 ACCCTGTATGAGATCGATTCCGATCTGAAAGAAAAAGTGCGGGGAA---- 745
BSNT_02709___ 744 TTTGGCAGAAGAGGATCTGCTGAAAGCCATCCAAGTTCATGAAAAGCATG 793
||||.|||..|.|.||..|.||||||||.||.||||||||||||||||
BL01217___pnp 746 --TGGCCGAATCGAACCTCTTAAAAGCCATTCAGGTTCATGAAAAGCATG 793
BSNT_02709___ 794 CCCGTGAAGATGCCATTAACGAAGTGAAGAACGCAGTTGTGGCAAAATTC 843
|.||.||.||.||.||.|.|||||||||.||||..|||.||||.||.||.
BL01217___pnp 794 CGCGCGAGGACGCGATCAGCGAAGTGAAAAACGAGGTTTTGGCCAAGTTT 843
BSNT_02709___ 844 GAGGATGAAGAACATGATGAAGACACAATCAAGCAAGTGAAGCAGATTTT 893
||.||.||.|||||.||||||||.||..|.||.||||||||..|.|||||
BL01217___pnp 844 GAAGAAGAGGAACACGATGAAGAAACGCTGAAACAAGTGAAAGACATTTT 893
BSNT_02709___ 894 ATCCAAGCTGGTGAAAAATGAAGTTCGCCGCCTGATTACTGAAGAGAAAG 943
.|||.||||.||.|||||||||||.|||||.||||||||.||.||.||||
BL01217___pnp 894 GTCCCAGCTTGTTAAAAATGAAGTGCGCCGTCTGATTACGGAGGAAAAAG 943
BSNT_02709___ 944 TAAGACCGGATGGCCGCGGTGTCGATCAAATCCGCCCGCTCTCTTCAGAG 993
|..|.||.||.|||.|.|.|||||||.|.|||||||||||.||||||||.
BL01217___pnp 944 TTCGTCCTGACGGCAGGGCTGTCGATGAGATCCGCCCGCTTTCTTCAGAA 993
BSNT_02709___ 994 GTTGGCCT-CTTGCCAAGAACGCACGGTTCAGGTCTATTTACAAGGGGAC 1042
||.||.|| ||| ||.|||||.|||||||||||.||.|||||||||||||
BL01217___pnp 994 GTCGGACTGCTT-CCGAGAACACACGGTTCAGGACTTTTTACAAGGGGAC 1042
BSNT_02709___ 1043 AAACTCAGGCCCTCAGCGTATGTACGCTAGGTGCTCTGGGAGATGTGCAG 1092
|.||||||||.||||||.|.||||||||.|||||.||.||.|||||||||
BL01217___pnp 1043 AGACTCAGGCGCTCAGCATTTGTACGCTCGGTGCGCTTGGCGATGTGCAG 1092
BSNT_02709___ 1093 ATCCTTGACGGCTTAGGTGTCGAAGAGTCGAAACGGTTTATGCATCATTA 1142
||..|.|||||..|.||.||||||||.||.|||||.||||||||.|||||
BL01217___pnp 1093 ATTTTAGACGGTCTCGGCGTCGAAGAATCCAAACGCTTTATGCACCATTA 1142
BSNT_02709___ 1143 CAACTTCCCGCAATTCAGCGTTGGGGAAACAGGACCGATGCGCGGACCGG 1192
||||||||||||.||||||||.|||||||||||.|||||||||||.||||
BL01217___pnp 1143 CAACTTCCCGCAGTTCAGCGTCGGGGAAACAGGGCCGATGCGCGGGCCGG 1192
BSNT_02709___ 1193 GACGTCGTGAAATCGGACACGGAGCACTGGGTGAGCGTGCGCTTGAGCCA 1242
||||.||.||||||||.||||||||.||.||.||.||.|||||||||||.
BL01217___pnp 1193 GACGCCGCGAAATCGGGCACGGAGCCCTCGGGGAACGAGCGCTTGAGCCG 1242
BSNT_02709___ 1243 GTTATTCCGTCTGAAAAAGACTTCCCTTATACTGTCCGTCTTGTTTCAGA 1292
.||.||||||||||||||||||||||.||.||..||||.||.||.||.||
BL01217___pnp 1243 ATTGTTCCGTCTGAAAAAGACTTCCCGTACACCATCCGCCTCGTCTCTGA 1292
BSNT_02709___ 1293 AGTGCTTGAATCAAACGGTTCTACATCTCAAGCAAGCATTTGCGCAAGCA 1342
|||||||||||||||||||||.||.||.||.||.||||||||.|||||||
BL01217___pnp 1293 AGTGCTTGAATCAAACGGTTCCACTTCCCAGGCGAGCATTTGTGCAAGCA 1342
BSNT_02709___ 1343 CACTTGCAATGATGGATGCTGGTGTACCGATTAAAGCGCCAGTTGCTGGT 1392
|.||.||.|||||||||||.||.||.|||||||||||.||.|||||.||.
BL01217___pnp 1343 CGCTAGCGATGATGGATGCAGGGGTGCCGATTAAAGCCCCGGTTGCCGGA 1392
BSNT_02709___ 1393 ATTGCGATGGGTCTTGTCAAATCAGGCGAACATTACACTGTCTTGACTGA 1442
||.|||||||||||||||||||||||.||..|.||.||.|||||.||.||
BL01217___pnp 1393 ATCGCGATGGGTCTTGTCAAATCAGGTGACAACTATACCGTCTTAACCGA 1442
BSNT_02709___ 1443 CATCCAAGGCATGGAAGATGCGCTCGGAGATATGGACTTTAAAGTAGCGG 1492
.||.|||||.||||||||....|||||.|||||||||||||||||.||||
BL01217___pnp 1443 TATTCAAGGTATGGAAGACCATCTCGGGGATATGGACTTTAAAGTGGCGG 1492
BSNT_02709___ 1493 GAACTGAAAAAGGCGTAACGGCCCTGCAAATGGACATTAAAATTGAAGGC 1542
||||....||||||||.||.||.|||||||||||.|||||.||.||||||
BL01217___pnp 1493 GAACGTCCAAAGGCGTCACAGCTCTGCAAATGGATATTAAGATCGAAGGC 1542
BSNT_02709___ 1543 CTTTCCAGAGAGATTCTTGAAGAAGCGCTTCAGCAGGCGAAAAAGGGCAG 1592
.|.||.|||||||||.|.|||||.||.|||||||||||||||||.|||||
BL01217___pnp 1543 TTATCGAGAGAGATTTTGGAAGAGGCTCTTCAGCAGGCGAAAAAAGGCAG 1592
BSNT_02709___ 1593 AATGGAAATCCTCAACAGCATGCT-TGCAACATTAAGC-GAATCAAGAAA 1640
||||||.|||||..|.|||||||| .|| ||||| .|| |||||||||||
BL01217___pnp 1593 AATGGAGATCCTTGAAAGCATGCTGAGC-ACATT-GGCTGAATCAAGAAA 1640
BSNT_02709___ 1641 AGAGCTTTCTCGATATGCGCCTAAGATCTTAACAATGACCATTAATCCTG 1690
|||||||||||..||||||||.||.|||||.||.|||.|.||.|||||.|
BL01217___pnp 1641 AGAGCTTTCTCCTTATGCGCCGAAAATCTTGACGATGTCGATCAATCCGG 1690
BSNT_02709___ 1691 ATAAAATCCGCGATGTCATCGGACCAAGCGGAAAACAAATCAATAAGATC 1740
|||||||||||||.||||||||||||||||||||||||||||||||||||
BL01217___pnp 1691 ATAAAATCCGCGACGTCATCGGACCAAGCGGAAAACAAATCAATAAGATC 1740
BSNT_02709___ 1741 ATCGAAGAAACCGGTGTTAAAATTGATATTGAGCAGGACGGCACAATCTT 1790
||.|||||.||.||.||||||||.||||||||.||.||||||||||||||
BL01217___pnp 1741 ATTGAAGATACAGGCGTTAAAATCGATATTGAACAAGACGGCACAATCTT 1790
BSNT_02709___ 1791 TATTTCCTCTACAGATGAAAGCGGCAACCAAAAAGCGAAAAAAATCATCG 1840
.|||||.|||||.|||||||||...||||||||||||||.||||||||||
BL01217___pnp 1791 CATTTCTTCTACCGATGAAAGCATGAACCAAAAAGCGAAGAAAATCATCG 1840
BSNT_02709___ 1841 AAGACCTTGTTAGAGAGGTTGAAGTCGGCCAACTTTACCTAGGTAAAGTG 1890
||||||||||.|||||.|||||||||||.||.||||||.|||||||||||
BL01217___pnp 1841 AAGACCTTGTCAGAGAAGTTGAAGTCGGACAGCTTTACTTAGGTAAAGTG 1890
BSNT_02709___ 1891 AAACGGATTGAAAAATTCGGGGCTTTCGTTGAAATTTTCAGCGGAAAAGA 1940
||.|||||||||||||||||.||||||||||||.|.||||||||||||||
BL01217___pnp 1891 AAGCGGATTGAAAAATTCGGAGCTTTCGTTGAACTGTTCAGCGGAAAAGA 1940
BSNT_02709___ 1941 CGGTTTGGTGCACATTTCAGAGCTTGCGCTTGAACGCGTAGGGAAAGTTG 1990
||||.|.||.||.|||||||||||||||||.|||||.|||||.|||||.|
BL01217___pnp 1941 CGGTCTTGTCCATATTTCAGAGCTTGCGCTCGAACGGGTAGGAAAAGTCG 1990
BSNT_02709___ 1991 AAGATGTTGTAAAAATCGGAGACGAGATTCTTGTCAAAGTCACTGAAATT 2040
|||||||.||.||||||||.||||||.|.|||||.||.||.||||||||.
BL01217___pnp 1991 AAGATGTCGTCAAAATCGGCGACGAGCTCCTTGTAAAGGTTACTGAAATC 2040
BSNT_02709___ 2041 GATAAACAAGGACGAGTGAATTTATCCCGCAAAGCGGTGCTCCGTGAAGA 2090
||||||||||||||.||.||.|||||..|.|||||.||.||.||||||.|
BL01217___pnp 2041 GATAAACAAGGACGCGTCAACTTATCAAGAAAAGCTGTACTGCGTGAACA 2090
BSNT_02709___ 2091 GAAAGAAAAAGAAGAACAACAATCTTAA 2118
|||.|||||||||||||||.||||.|||
BL01217___pnp 2091 GAAGGAAAAAGAAGAACAAAAATCGTAA 2118
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