Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02722 and BL01207
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:28
# Commandline: needle
# -asequence dna-align/BSNT_02722___ymfA.1.5803.seq
# -bsequence dna-align/BL01207___ymfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02722___ymfA-BL01207___ymfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02722___ymfA-BL01207___ymfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02722___ymfA
# 2: BL01207___ymfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1695
# Identity: 1310/1695 (77.3%)
# Similarity: 1310/1695 (77.3%)
# Gaps: 57/1695 ( 3.4%)
# Score: 4905.5
#
#
#=======================================
BSNT_02722___ 1 TTGAAAAAGAAAAATACAGAAAACGTTAGAATTATCGCCCTTGGCGGTGT 50
|||||| ||||||||||||||..|||||||.||||||.|.||.||.||
BL01207___ymf 1 TTGAAA---AAAAATACAGAAAATATTAGAATCATCGCCTTAGGAGGCGT 47
BSNT_02722___ 51 CGGAGAGATTGGGAAGAACCTTTATGTCATTGAAATTGACTCAGACATAT 100
|||||||||.||.||.|||||.||||||||||||||.||.||||||||||
BL01207___ymf 48 CGGAGAGATCGGAAAAAACCTCTATGTCATTGAAATCGATTCAGACATAT 97
BSNT_02722___ 101 TTGTCGTTGATGCCGGCCTTATGCATCCAGAAAACGAAATGCTCGGTATT 150
|.||.|||||.||||||||.||||||||||||||.||||||||.|||||.
BL01207___ymf 98 TCGTGGTTGACGCCGGCCTCATGCATCCAGAAAATGAAATGCTGGGTATC 147
BSNT_02722___ 151 GATGTAGTGATTCCTGACATATCATATTTGATTGAACGGGCTGACCGCGT 200
|||||.||.||.||||||||.||.|||||.||||||||..||||||||||
BL01207___ymf 148 GATGTGGTCATCCCTGACATTTCTTATTTAATTGAACGATCTGACCGCGT 197
BSNT_02722___ 201 CAAGGCAATCTTTTTAACGCACGGGCACGATGAAAATATCGGCGGCGTTT 250
.|||||.||.|||.|.||.||||||||.||.|||||.|||||||||||.|
BL01207___ymf 198 AAAGGCGATTTTTCTCACACACGGGCATGAAGAAAACATCGGCGGCGTAT 247
BSNT_02722___ 251 TTTACTTATTAAACAAGCTGTCCGTTCCAGTGTACGGAACAAAACTGACG 300
||||||...|.||||||||.||.||.||.||.||||||||.||.||||||
BL01207___ymf 248 TTTACTGCCTGAACAAGCTTTCTGTGCCTGTTTACGGAACGAAGCTGACG 297
BSNT_02722___ 301 CTTGCACTGTTAAGAGAGAAA--TTAAAACAATACGGACATAACCGAAAA 348
|||||.||.|||| || |||| .|.||.||.|||||....||| ||||
BL01207___ymf 298 CTTGCCCTTTTAA-AG-GAAACGCTGAAGCAGTACGGTGTAAAC--AAAA 343
BSNT_02722___ 349 A--CTGATTTAAGAGAAATTCACTCAAAATCTGTCATTACATTTGAATCA 396
| |.|||||||||||||||||.||||||||.||.||||||||||||||.
BL01207___ymf 344 AGCCCGATTTAAGAGAAATTCATTCAAAATCCGTTATTACATTTGAATCG 393
BSNT_02722___ 397 ACAAAAGTATCGTTCTTTAGAACGATTCACAGCATTCCTGATTCTGTAGG 446
|||||.||.||.|||||.|.|||.|.|||||||||.||.|||||.||.||
BL01207___ymf 394 ACAAAGGTGTCATTCTTCAAAACAAATCACAGCATCCCGGATTCCGTCGG 443
BSNT_02722___ 447 TGTGAGCTTTAAAACATCACTTGGATCTATTGTATGCACGGGAGACTTCA 496
|||.||||||||||||||.||.|||||.||.||.|||||.||.||.||.|
BL01207___ymf 444 TGTCAGCTTTAAAACATCCCTCGGATCCATCGTGTGCACAGGCGATTTTA 493
BSNT_02722___ 497 AATTTGACCAAACACCTGCACTTAATCAGACGTGCGACATTGGCGAGATC 546
||||||||||.|||||||...|.||.|||||..|||||||.|||||.||.
BL01207___ymf 494 AATTTGACCAGACACCTGTGTTAAACCAGACAAGCGACATCGGCGAAATT 543
BSNT_02722___ 547 GCCAAGATCGGCAATAGCGGCGTGCT-CGCTCTGCTTTCTGACAGTGCAA 595
|||||.||||||||.|||||.||||| .|| ||||||||.|||||.||.|
BL01207___ymf 544 GCCAAAATCGGCAACAGCGGTGTGCTGTGC-CTGCTTTCCGACAGCGCCA 592
BSNT_02722___ 596 ATGCGGAACGGCCGGGTTACACCCCTTCGGAAGCGGCT-GTCAGCGGAGA 644
||||.||...||||||.||.||.|||||.||||| .|| ||..|||||||
BL01207___ymf 593 ATGCCGAGAAGCCGGGCTATACGCCTTCAGAAGC-ACTCGTTGGCGGAGA 641
BSNT_02722___ 645 AATTTCGGATGCGCTGTATAATTCACAGAACCGGGTGATTATTGCTGTTT 694
.||.||.||||.|.||||.||..|..|.|||||.|||||||||||.||.|
BL01207___ymf 642 GATATCCGATGTGATGTACAACGCCGAAAACCGCGTGATTATTGCCGTGT 691
BSNT_02722___ 695 TCGCATCCAATATTAACCGGATTCAGCAAGTCATTCATGCAGCGGCT-CA 743
||||.||.||..||||||||||||||||.||.|||.||||.|| ||| ||
BL01207___ymf 692 TCGCGTCTAACTTTAACCGGATTCAGCAGGTGATTGATGCCGC-GCTGCA 740
BSNT_02722___ 744 AAATGGCAGAAAGATTGCCGTAGCCGGAAAAAATCTTCAATCTG---TCC 790
|||.|||||.|||.||||.||..|.||.||||||.|| ||.| |.|
BL01207___ymf 741 AAACGGCAGGAAGCTTGCAGTTTCAGGGAAAAATATT---TCGGCGATAC 787
BSNT_02722___ 791 TGCAGCTGGCGA-GAAA----GTTAGGATACATTGAAGCAGATGATGAAT 835
|.|||||||||| |||| |.||.|..|| .||||||||.||..
BL01207___ymf 788 TCCAGCTGGCGATGAAACTCGGGTATGTCAC-----GGCAGATGAAGATA 832
BSNT_02722___ 836 TGTTTATTTCTGTACAGGATGTCAAAAAATATCCGAAGCGCGAAGTGGCC 885
||||.||..||||.||.||.||||||||.|||||.||..|.|||||.||.
BL01207___ymf 833 TGTTCATCCCTGTCCAAGAAGTCAAAAAGTATCCAAAAAGAGAAGTCGCG 882
BSNT_02722___ 886 ATTATTACAGCCGGA-AGCCAAGGTGAACCATTAGCTGCTTTGACAAGAA 934
|||.|.|||| .||| |.|||.||.||.||..|.||.||.|||||.||.|
BL01207___ymf 883 ATTTTGACAG-GGGACAACCATGGAGAGCCGCTCGCCGCATTGACCAGGA 931
BSNT_02722___ 935 TGGCAAACAAAGCTCACAAACAGCTGAACATTGAAGAAGGGGATACGGTG 984
|.|||||..|||..||.||.|||||..|||||||.|||||||||||.||.
BL01207___ymf 932 TCGCAAAACAAGGGCATAAGCAGCTTGACATTGAGGAAGGGGATACCGTC 981
BSNT_02722___ 985 GTCATTGCGTCAACTCCGAT-TCCCGGG-CAGGAACTCATTTACTCTAAA 1032
.|.||.||.|| ||||..| ||||||| |||||.||..|||||||.|||
BL01207___ymf 982 CTGATCGCATC--CTCCCCTATCCCGGGTCAGGAGCTTGTTTACTCCAAA 1029
BSNT_02722___ 1033 ACAGTAGATCTTCTT-GCGAGAGCCGGTGCACAAGTCATCTTTGCCCAAA 1081
.|.||.|||| |||| .|||||||.||.||.||.|||.|.||.||.||||
BL01207___ymf 1030 GCGGTCGATC-TCTTAACGAGAGCGGGCGCCCAGGTCGTATTCGCACAAA 1078
BSNT_02722___ 1082 AGCGTGTTCATGTATCAGGACACGGCTCACAAGAAGAGTTAAAGCTGATG 1131
|.||.||.|||||||||||.||.||||..|||||||||.|.|||||||||
BL01207___ymf 1079 AACGCGTCCATGTATCAGGCCATGGCTGTCAAGAAGAGCTGAAGCTGATG 1128
BSNT_02722___ 1132 ATCAACCTGCTTAAACCAAAATATTTGATTCCTGTAAACGGCGAATACAG 1181
.|||||.||||.||.||.||.|||||.||.||.||||||||.||||||||
BL01207___ymf 1129 CTCAACTTGCTGAAGCCGAAGTATTTAATCCCCGTAAACGGTGAATACAG 1178
BSNT_02722___ 1182 AATGCAAAAAGCTCATTCAAAAATCGCTGAAGAAACCGGCATGAAGCGCA 1231
||||||||||||.|||||.||..|.||.|||||||.|||||||||.||.|
BL01207___ymf 1179 AATGCAAAAAGCGCATTCCAAGCTTGCCGAAGAAATCGGCATGAAACGGA 1228
BSNT_02722___ 1232 GTGACATCTTCTTAATTGAAAAAGGCGACGTCGTTGAATTCCGCGGCCAA 1281
|.|||||.|||.|.|||||||||||.||.|||||.|||||||||||.|||
BL01207___ymf 1229 GCGACATTTTCCTGATTGAAAAAGGAGATGTCGTGGAATTCCGCGGACAA 1278
BSNT_02722___ 1282 AACGTAAAAATTGGGGATAAAGTTC-CTTACGGCAATATTTTAATTGATG 1330
|||||.|||||.||.||||||||.| ||.| ||||||||.||.||.||.|
BL01207___ymf 1279 AACGTTAAAATCGGCGATAAAGTACACTCA-GGCAATATATTGATCGACG 1327
BSNT_02722___ 1331 GTTTAGGTGTCGGTGATATCGGCAATATCGTATTGAGAGACCGCCGCTTG 1380
|..|.||.|||||.|||||||||||.|||||..|.|||||||||||..||
BL01207___ymf 1328 GACTCGGCGTCGGCGATATCGGCAACATCGTGCTCAGAGACCGCCGTCTG 1377
BSNT_02722___ 1381 CTTTCACAGGACGGAATTTTAATCGTTGTCATTACACTTGATAAACAAAA 1430
||.||.|||||||||||.|||||.|||||.|||||.|||||||||.|.||
BL01207___ymf 1378 CTATCCCAGGACGGAATCTTAATTGTTGTGATTACCCTTGATAAAAAGAA 1427
BSNT_02722___ 1431 GAAACATCTTGTGTCAGGACCAGAAATTATCACTCGCGGCTTTGTTTATG 1480
.||||||||.||.||||||||.|||||||||||..|.||.|||||.||||
BL01207___ymf 1428 AAAACATCTAGTTTCAGGACCCGAAATTATCACGAGAGGTTTTGTCTATG 1477
BSNT_02722___ 1481 TAAGAGAGTCTGAAGGTCTAATCGTACAGGCTACTGAGCTCGTCCGGTCC 1530
|.|||||.||||||...||.|||||..|.||.||.|||||.|||.||...
BL01207___ymf 1478 TCAGAGAATCTGAACAGCTGATCGTTGAAGCGACAGAGCTTGTCAGGGAA 1527
BSNT_02722___ 1531 ATCGT-GACAGAAGCGACTGAAA----CATCAAATGTCGAATGGTCAACG 1575
.|||| .||..|||| ||.|||| |.|| ||||||||||| ||
BL01207___ymf 1528 CTCGTCAACGAAAGC-ACAGAAAACGCCGTC----GTCGAATGGTC--CG 1570
BSNT_02722___ 1576 C--TGAAGCAGGCAATGCGGGATGCTTTGAACCAATTCCTTTATGAAAAA 1623
| |.||.|||.|.|||||.||.||.||.|||||.|||||.||.||||||
BL01207___ymf 1571 CCTTAAAACAGACGATGCGTGAGGCATTAAACCAGTTCCTATACGAAAAA 1620
BSNT_02722___ 1624 ACGAAACGTAAACCGATGATCATCCCAATTATTATGGAAGTATAA 1668
||||||||.|||||.||||||||.|||||.||.||||||||||||
BL01207___ymf 1621 ACGAAACGAAAACCAATGATCATTCCAATCATCATGGAAGTATAA 1665
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