Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02733 and BL01200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:29
# Commandline: needle
# -asequence dna-align/BSNT_02733___ymfH.1.5803.seq
# -bsequence dna-align/BL01200___ymfH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02733___ymfH-BL01200___ymfH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02733___ymfH-BL01200___ymfH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02733___ymfH
# 2: BL01200___ymfH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1303
# Identity: 971/1303 (74.5%)
# Similarity: 971/1303 (74.5%)
# Gaps: 32/1303 ( 2.5%)
# Score: 3515.5
#
#
#=======================================
BSNT_02733___ 1 TTGATCAAACCAATCGAATATGAACAGCTTCAGGAGACGCTGTATCATGA 50
||||..|||.|.|||||||.|||||||||..||||.||.||.|||.|.||
BL01200___ymf 1 TTGACGAAAACGATCGAATTTGAACAGCTGAAGGAAACACTATATTACGA 50
BSNT_02733___ 51 AAAAATGTCCAACGGCCTTGATGTTTACGTTTTGCCGAAAAAAGGCTTCA 100
|||||||.|...||||||.|||||.||.|||.|.||||||.||||.||.|
BL01200___ymf 51 AAAAATGCCTGGCGGCCTCGATGTCTATGTTCTTCCGAAAGAAGGATTTA 100
BSNT_02733___ 101 ACAAGACATATGCGGTCTTTACAACAAAGTACGGCTCGATAGATAACCGG 150
||||||||||||||||||||||.|||||.|||||.|||||.||.||.|.|
BL01200___ymf 101 ACAAGACATATGCGGTCTTTACCACAAAATACGGGTCGATTGACAATCAG 150
BSNT_02733___ 151 TTTGTCCCTTTAGGTAAAAACGAGATGGTTCACGTGCCGGACGGGATTGC 200
||||||||..|.||.|||.|.||.|||||.|.||||||.||.||.||.||
BL01200___ymf 151 TTTGTCCCGCTCGGAAAAGATGAAATGGTCCGCGTGCCTGATGGAATCGC 200
BSNT_02733___ 201 TCACTTTCTTGAGCACAAGCTGTTTGAGAAAGCGGACGGAGACGTTTTTC 250
.||||||||.||.||.|||||.|||||.||||..|||||.||||||||||
BL01200___ymf 201 ACACTTTCTCGAACATAAGCTCTTTGAAAAAGAAGACGGCGACGTTTTTC 250
BSNT_02733___ 251 AAGATTTCAGCAAACAGGGGGCTTCTGCCAATGCGTTTACGTCATTTACA 300
|..|.|||||||..|||||.|||||.||.|||||||||||.||.||.|||
BL01200___ymf 251 AGCAATTCAGCAGGCAGGGAGCTTCGGCAAATGCGTTTACCTCCTTCACA 300
BSNT_02733___ 301 AGAACGGCTTACCTTTTCTCAAGCACATCAAATGTTGAACGCAATTTAGA 350
||||||||.|||||.||.||||||||.||||||||.|||...||..|.||
BL01200___ymf 301 AGAACGGCCTACCTGTTTTCAAGCACGTCAAATGTGGAAGAAAACCTGGA 350
BSNT_02733___ 351 GACGCTTATCGATTTCGTACAGGACCCATATTTTACTGAAAAAACGGTTG 400
.|||||..||||.||.||.||||||||.||.|||||.|||||||||||||
BL01200___ymf 351 AACGCTCGTCGACTTTGTGCAGGACCCTTACTTTACAGAAAAAACGGTTG 400
BSNT_02733___ 401 AAAAGGAAAAAGGGATTATCGGGCAGGAGATTAATATGTACGACGATAAC 450
|.|||||||||||.||.|||||.|||||.||.||.|||||.|||||.|||
BL01200___ymf 401 AGAAGGAAAAAGGCATCATCGGACAGGAAATCAACATGTATGACGACAAC 450
BSNT_02733___ 451 CCTGATTGGAGGCTTTACTTCGGGGTCATTGAAAACATGTACAAAGAGCA 500
||.||.|||.|.||.|..|||||..|.||.|||||||||||..|||||||
BL01200___ymf 451 CCCGACTGGCGCCTGTTTTTCGGCCTGATCGAAAACATGTATCAAGAGCA 500
BSNT_02733___ 501 TCCTGTCAGAATTGACATAGCGGGAACAGTGGAAAGCATTTCACATATTA 550
.||||||.|.||.||.||.||.||.||..|.||||||||.||.|||||||
BL01200___ymf 501 CCCTGTCCGGATCGATATCGCAGGCACGATCGAAAGCATCTCTCATATTA 550
BSNT_02733___ 551 CAAAAGACCTTCTTTATGAATGCTATGAAACGTTTTATCACCCGAGTAAC 600
|||||||||||.|.||.|||||||||||.|||||.|||||.|||||.||.
BL01200___ymf 551 CAAAAGACCTTTTGTACGAATGCTATGAGACGTTCTATCATCCGAGCAAT 600
BSNT_02733___ 601 ATGCTCCTTTTCATTGTCGGACCTGTAGATCCTGAAGCGATTATTTCTCA 650
|||||.||.||..|.|||||.||.|..|||||.||||||||.|||...||
BL01200___ymf 601 ATGCTGCTGTTTGTCGTCGGTCCGGCCGATCCCGAAGCGATCATTCGCCA 650
BSNT_02733___ 651 GGTAAGAGAAAACCAGGGGAAAAAGCCGTATACTGATCAGCCGGAGATCA 700
|||..|.|||||||||..||||||.||||||||.||.|||||.||.|||.
BL01200___ymf 651 GGTCCGCGAAAACCAGCAGAAAAAACCGTATACAGACCAGCCTGAAATCG 700
BSNT_02733___ 701 AACGGGAAGAAGTGAAAGAGCAAGAAGCGGTTTTCCGAAAAGAAAAAGAG 750
..|||.|||||||.|||||||..|..||.||.||...|||||||.|.||.
BL01200___ymf 701 TCCGGAAAGAAGTTAAAGAGCCTGGGGCCGTATTTAAAAAAGAACAGGAA 750
BSNT_02733___ 751 ATCAAAATGAACGTGCAGGGACCGAAATGCCTTGTTGGGCTGAAA----- 795
||.||||||||.||.||..|..|.||||||||.||.||..|.|||
BL01200___ymf 751 ATTAAAATGAATGTTCAAAGCTCAAAATGCCTCGTCGGTTTAAAAAGCGC 800
BSNT_02733___ 796 TCCAAAAATCCGTTTAAATTA-GGCAAAGAGCTCT--TAAAGCATGAACT 842
|| |||||.|.|| || ||.|.| |||.|| |.||||||||.||
BL01200___ymf 801 TC-----ATCCGATGAA--TACGGGAGA-AGCCCTGCTGAAGCATGAGCT 842
BSNT_02733___ 843 TTCAATGAACTTATTGCTTGAAGCTCTTTTTGGCAAAAGCTCTGCCCAGT 892
..|.||.|||.|..|.||.||...|||.||||||||||||||...|.|.|
BL01200___ymf 843 GACCATCAACCTCATCCTCGAGTGTCTGTTTGGCAAAAGCTCAAGCGATT 892
BSNT_02733___ 893 ATGAATCACTTTATGAAAAAGGATATATTGACGAAACGTTTAGCTTTGAT 942
|.|||..|.|||||||||||||.|||||.||.||.||.||.||||.|||.
BL01200___ymf 893 ACGAAAGAATTTATGAAAAAGGGTATATCGATGAGACATTCAGCTATGAC 942
BSNT_02733___ 943 TTTACTGCTGAATATGGGTTCGGTTTTGCGGCGATCGGCGGAGATACGCC 992
|.|||||..|||.|.||.||.||.||.|...|..||||||||||||||||
BL01200___ymf 943 TATACTGAAGAACACGGATTTGGCTTCGTCTCTGTCGGCGGAGATACGCC 992
BSNT_02733___ 993 TGAGCCTGATCAA-TTGGCTGAAGA-CATTTCAAGCA--TGCTTTT---- 1034
||||||||| ||| .||||.||||| | ||||.|| ||||.||
BL01200___ymf 993 TGAGCCTGA-CAAGCTGGCCGAAGAGC---TCAAACAAGTGCTGTTCAAA 1038
BSNT_02733___ 1035 GCGCGCCGGTGAACTGATTACTGCTGAAAAGATTGAACTTGCCAGAAAGA 1084
||| ...|||..|||.||.||.||||||.|.|||||.||||||||||
BL01200___ymf 1039 GCG----AAAGAAACGATCACAGCCGAAAAGCTGGAACTGGCCAGAAAGA 1084
BSNT_02733___ 1085 AAAAGATTGGCACATTCTTAAAAGCGCTGAATTCCCCTGAATACATTGCC 1134
||||.||.||||..|||.|.|||.||.|||||||.|||||.|||||.|||
BL01200___ymf 1085 AAAAAATCGGCAATTTCCTGAAATCGATGAATTCGCCTGAGTACATCGCC 1134
BSNT_02733___ 1135 AATCAATTTACCCGTTATGCGTTCTTGGATATGAGTCTGTTTGACGTTGT 1184
||.||.|||||.||.||.||.||..||||.|.||||||||||||..|.||
BL01200___ymf 1135 AACCAGTTTACACGGTACGCTTTTCTGGAGACGAGTCTGTTTGATATCGT 1184
BSNT_02733___ 1185 AACGGTACTCGAGCAGATTACCCTCGAGGATGTCCAGAACGTAATACAAG 1234
.||.||||||||...||||||.||.||.||.||.||...|||.||..|.|
BL01200___ymf 1185 CACCGTACTCGAATCGATTACGCTTGATGACGTTCACCGCGTCATTGAGG 1234
BSNT_02733___ 1235 AGGAAATTGCTGCAGACAGACTGACTGTCTGCAAGGTTGTTCCTAAATCA 1284
|.|||.|||..|.||||||..|.||.||||||||.||.|||||.||||||
BL01200___ymf 1235 AAGAAGTTGAGGAAGACAGGATCACCGTCTGCAAAGTCGTTCCAAAATCA 1284
BSNT_02733___ 1285 TAA 1287
|||
BL01200___ymf 1285 TAA 1287
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