Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02794 and BL01192

See Amino acid alignment / Visit BSNT_02794 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:33
# Commandline: needle
#    -asequence dna-align/BSNT_02794___nrdE.1.5803.seq
#    -bsequence dna-align/BL01192___nrdE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02794___nrdE-BL01192___nrdE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02794___nrdE-BL01192___nrdE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02794___nrdE
# 2: BL01192___nrdE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2113
# Identity:    1678/2113 (79.4%)
# Similarity:  1678/2113 (79.4%)
# Gaps:          20/2113 ( 0.9%)
# Score: 6644.0
# 
#
#=======================================

BSNT_02794___      1 TTGTCACAAAATCAAGTGCCAAAATGGATCCAGTTAAATAACGAAATCAT     50
                     ||||||||||||||||||||||||||||||||||||||.||.||.|||||
BL01192___nrd      1 TTGTCACAAAATCAAGTGCCAAAATGGATCCAGTTAAACAATGAGATCAT     50

BSNT_02794___     51 GATCCAAAAAGATGGAAAATTCCAGTTTGATAAGGATAAAGAGGCTGTAC    100
                     ||||||||||||.||.|||||||||||||||||.||||||||.|||||||
BL01192___nrd     51 GATCCAAAAAGACGGGAAATTCCAGTTTGATAAAGATAAAGAAGCTGTAC    100

BSNT_02794___    101 ATAGCTATTTTGTAGATTATATCAATCAAAACACAGTCTTCTTTCACGAT    150
                     ||||.|||||||||||.||||||||.|||||.||.||.||.||.||.|||
BL01192___nrd    101 ATAGTTATTTTGTAGACTATATCAACCAAAATACGGTATTTTTCCATGAT    150

BSNT_02794___    151 TTAAAAGAGAAGCTGGATTATTTGGTTGAAAATCAA-------TACTACG    193
                     .|.||||||||..|.|||||.||       ||||||       |||||.|
BL01192___nrd    151 CTGAAAGAGAAAATCGATTACTT-------AATCAAGAATGACTACTATG    193

BSNT_02794___    194 AAGAGGAATTCTTAAGCCTTTATTCTTTTGAAGACATTAAAGAAGTGTT-    242
                     ||||.||.||.|||||||..||..|.||||||||.||.||||||||||| 
BL01192___nrd    194 AAGAAGAGTTTTTAAGCCGCTACACGTTTGAAGAAATCAAAGAAGTGTTC    243

BSNT_02794___    243 TAAGACAGCTTACGCTAAGAAGTTTCGTTTTCCTTCCTTCATGAGTGCGT    292
                     .|||| .||||||||.||.||.||..|.||.||.|||||.|||||.||.|
BL01192___nrd    244 AAAGA-GGCTTACGCCAAAAAATTCAGATTCCCGTCCTTTATGAGCGCTT    292

BSNT_02794___    293 TTAAATTCTATAATGACTATGCTTTGAAAACGAATGACAAGAAAAAAATC    342
                     ||||.||.||.|||||.|||||..||||.||.||.||||||||||||||.
BL01192___nrd    293 TTAAGTTTTACAATGATTATGCGCTGAAGACAAACGACAAGAAAAAAATT    342

BSNT_02794___    343 CTCGAGCGTTATGAGGACCGGATCTCAATTGTTGCGCTGTTCTTCGCTAA    392
                     ||.||.||.|||||.|||.|.|||||.||.||.||..|.||.||.||.||
BL01192___nrd    343 CTTGAACGCTATGAAGACAGAATCTCTATCGTAGCTTTATTTTTTGCAAA    392

BSNT_02794___    393 CGGCGACACTGAGAAAGCAAAAGAATATGTAAACCTGATGATCAATCAAG    442
                     |||.||.|..|||||.||.||.||||..||.|...||||||||||.||.|
BL01192___nrd    393 CGGGGATAAGGAGAAGGCGAAGGAATTCGTCAGAATGATGATCAACCAGG    442

BSNT_02794___    443 AATATCAGCCGAGCACACCGACATTTCTGAACGCCGGCAGAAAACGCCGC    492
                     |.||||||||||||||.|||||.||..|.||.||||||.|.|||||||||
BL01192___nrd    443 AGTATCAGCCGAGCACGCCGACGTTCTTAAATGCCGGCCGCAAACGCCGC    492

BSNT_02794___    493 GGTGAACTTGTGAGCTGCTTCTTGCTGGAAGTCAATGATTCCTTAAACGA    542
                     ||.||.||.||.|||||.|||.|..|||||||||||||||||||.|||||
BL01192___nrd    493 GGAGAGCTGGTCAGCTGTTTCCTCTTGGAAGTCAATGATTCCTTGAACGA    542

BSNT_02794___    543 CATTTCAAGAGCGATCGATATCTCCATGCAGCTTTCTAAACTGGGCGGAG    592
                     ||||||.||||||||.||.||.||.||||||||.||.||.||.|||||||
BL01192___nrd    543 CATTTCGAGAGCGATTGACATTTCGATGCAGCTGTCAAAGCTCGGCGGAG    592

BSNT_02794___    593 GGGTTTCTCTTAACCTGTCCAAGCTTCGCGCGAAAGGTGAAGCCATTAAA    642
                     |.||.|||.|.|||||.||.||.||.||.||||||||.|||||.||.|||
BL01192___nrd    593 GCGTATCTTTAAACCTTTCAAAACTGCGTGCGAAAGGCGAAGCGATCAAA    642

BSNT_02794___    643 GATGTTGAGAATGCGACAAAAGGCGTTGTAGGCGTCATGAAGCTTCTTGA    692
                     |||||.||.||.|||||||||||.||.||.|||||.||||||||||||||
BL01192___nrd    643 GATGTCGAAAACGCGACAAAAGGTGTCGTCGGCGTGATGAAGCTTCTTGA    692

BSNT_02794___    693 TAACGCGTTCCGTTACGCTGACCAAATGGGACAAAGACAAGGATCCGGCG    742
                     .|||||.|||||.|||||||||||||||||.|||||||||||.||.||||
BL01192___nrd    693 CAACGCATTCCGCTACGCTGACCAAATGGGGCAAAGACAAGGCTCAGGCG    742

BSNT_02794___    743 CGGCGTATTTAAACATTTTCCACCGCGATATCAATGATTTTCTCGATACG    792
                     |.|||||.||||||||||||||||||||.|||||.|||||.|||||||||
BL01192___nrd    743 CTGCGTACTTAAACATTTTCCACCGCGACATCAACGATTTCCTCGATACG    792

BSNT_02794___    793 AAAAAGATTTCTGCGGATGAAGATGTGCGTGTCAAAACGCTTTCGATCGG    842
                     ||.||||||||.||.||.||.|||||.||.||.|||||..|.||.|||||
BL01192___nrd    793 AAGAAGATTTCGGCTGACGAGGATGTCCGGGTGAAAACATTGTCCATCGG    842

BSNT_02794___    843 TGTTGTCATTCCGGATAAGTTCGTTGAGCTTGCACGCGAGGACAAAGCGG    892
                     .|||||||||||.|||||.|||.|.|||||||||.|.|||||.|||||||
BL01192___nrd    843 GGTTGTCATTCCAGATAAATTCATCGAGCTTGCAAGAGAGGATAAAGCGG    892

BSNT_02794___    893 CTTATGTATTCTACCCGCACACGATTTATAAAGAGTACGGCCAGCACATG    942
                     |.||.||.|||||.||||||||..|||||||||.|||||||.|||||.|.
BL01192___nrd    893 CATACGTCTTCTATCCGCACACCGTTTATAAAGCGTACGGCGAGCACCTC    942

BSNT_02794___    943 GATGAGATGGACATGAACGAAATGTACGACAAATTTGTCGACAACCCTCG    992
                     ||.||.|||||.||||||||.|||||||||....||||.||..|.||.||
BL01192___nrd    943 GACGAAATGGATATGAACGAGATGTACGACCGGCTTGTGGAAGATCCGCG    992

BSNT_02794___    993 GGTGAAAAAGGAAAAAATCAACCCGCGGAAACTGCTTGAAAAACTGGCGA   1042
                     .||.|||||.|||||||||.|||||||.||..||||.|||||.||.||||
BL01192___nrd    993 CGTCAAAAAAGAAAAAATCCACCCGCGCAAGATGCTCGAAAAGCTTGCGA   1042

BSNT_02794___   1043 TGCTTCGTTCTGAATCAGGCTATCCATACATCATGTTCCAAGATAACGTC   1092
                     ||.|..|.||.|||||.||.|||||.|||||.||||||||.||.||||||
BL01192___nrd   1043 TGTTAAGATCGGAATCCGGGTATCCGTACATTATGTTCCAGGACAACGTC   1092

BSNT_02794___   1093 AATAAAGTGCATGCGAATAACCATATTTCCAAGGTCAAATTTTCTAACCT   1142
                     ||.||.|||||||||||.||.||||||||.||.||.||||||||.|||||
BL01192___nrd   1093 AACAACGTGCATGCGAACAATCATATTTCAAAAGTTAAATTTTCCAACCT   1142

BSNT_02794___   1143 TTGCTCTGAAGTGCTGCAGGCATCTCAAGTTTCTTCATACACAGACTATG   1192
                     ||||||.||.||.||||||||.||.||||||||.||||||||||||||.|
BL01192___nrd   1143 TTGCTCGGAGGTTCTGCAGGCTTCACAAGTTTCATCATACACAGACTACG   1192

BSNT_02794___   1193 ATGAAGAAGATGAAATCGGTCTGGATATTTCCTGCAACCTGGGTTCGCTT   1242
                     .|.||||||||||.|||||.||.||.||.|||||||||||.|||||..|.
BL01192___nrd   1193 GTCAAGAAGATGAGATCGGCCTTGACATCTCCTGCAACCTTGGTTCATTG   1242

BSNT_02794___   1243 AACATTCTAAATGTCATGGAGCATAAATCAATCGAAAAGACAGTCAAGCT   1292
                     ||||||.|.||.||||||.|..|.|||||..||||..|||||||.|||||
BL01192___nrd   1243 AACATTTTGAACGTCATGAAAAACAAATCGCTCGAGCAGACAGTTAAGCT   1292

BSNT_02794___   1293 TGCGACAGACTCTTTAACACACGTGTCTGAAACAACTGACATCCGTAATG   1342
                     |||.||.||.||..|.||.|||||.||||||||.||..||||....||.|
BL01192___nrd   1293 TGCAACCGATTCGCTGACGCACGTTTCTGAAACGACAAACATTACAAACG   1342

BSNT_02794___   1343 CGCCTGCTGTAAGACGGGCAAACAAAGCGATGAAATCAATCGGCCTCGGT   1392
                     |.||.|||||.|.|...||.|||||||||||||||||.|||||.|||||.
BL01192___nrd   1343 CACCGGCTGTCAAAAAAGCGAACAAAGCGATGAAATCCATCGGGCTCGGA   1392

BSNT_02794___   1393 GCTATGAACCTTCACGGCTACCTTGCGCAAAACGGCATTGCGTATGAAAG   1442
                     ||.||||||||.|||||.|.|.|.||.||.|||...||.||.||.|||||
BL01192___nrd   1393 GCGATGAACCTGCACGGATTCTTGGCACAGAACAATATCGCCTACGAAAG   1442

BSNT_02794___   1443 TCCGGAAGCGCGTGACTTTGCAAACACGTTCTTTATGATGGTGAACTTCT   1492
                     |..|||||||.|.|||||.||.|||||.||||||||||||.|||||||||
BL01192___nrd   1443 TGAGGAAGCGAGGGACTTCGCGAACACTTTCTTTATGATGATGAACTTCT   1492

BSNT_02794___   1493 ACTCCATCCAGCGTTCTGCGGAAATCGCAAAAGAGAAGGGTGAAACGTTT   1542
                     ||||.||..|.||.||.||.||||||||.|||||.||.|||||.||||..
BL01192___nrd   1493 ACTCGATTGAACGATCCGCCGAAATCGCCAAAGAAAAAGGTGAGACGTAC   1542

BSNT_02794___   1543 GATCAATATGAAGGCTCAACCTATGCGACAGGTGAATACTTTGACAAATA   1592
                     .||...||.|||||.|||.|.||.||.||.|||||||||||.||.||.||
BL01192___nrd   1543 CATGGGTACGAAGGTTCAGCTTACGCAACGGGTGAATACTTCGAAAAGTA   1592

BSNT_02794___   1593 CGTTTCTAC-TGATTTCTCACCGAAATATGAAAAAATAGCTAATCTGTTT   1641
                     .|||.| || .||||||||.||.||||..||||||.|.||.||.||.|||
BL01192___nrd   1593 TGTTAC-ACAAGATTTCTCGCCTAAATTCGAAAAAGTGGCCAAGCTTTTT   1641

BSNT_02794___   1642 GAAGGTATGCATATCCCGACGACAGAGGACTGGAAAAAGCTAAAAGCA-T   1690
                     |||||.|||||.||||||||.|.|||.||||||||..||||.||| || |
BL01192___nrd   1642 GAAGGCATGCACATCCCGACAAAAGAAGACTGGAAGCAGCTGAAA-CAGT   1690

BSNT_02794___   1691 TTGTGGCTGAACACGGTATGTATCACAGCTACAGATTATGCATTGCGCCG   1740
                     ||||....||||||||..||||.|||||||||.|..|.|||||.||.|||
BL01192___nrd   1691 TTGTCAAAGAACACGGATTGTACCACAGCTACCGGCTGTGCATCGCACCG   1740

BSNT_02794___   1741 ACAGGCTCTATCTCATACGTTCAATCAAGTACGGCGTCTGTTATGCCGAT   1790
                     ||.||.||.||.|||||.||.||.|||||.||.||.||.|||||||||||
BL01192___nrd   1741 ACCGGATCCATTTCATATGTACAGTCAAGCACAGCATCGGTTATGCCGAT   1790

BSNT_02794___   1791 TATGGAACGCATTGAAGAACGAACATACGGCAACTCAAAAACGTACTACC   1840
                     .|||||.||.|||||||||.||||||||||||||||.||.|||||.||.|
BL01192___nrd   1791 CATGGAGCGGATTGAAGAAAGAACATACGGCAACTCCAAGACGTATTATC   1840

BSNT_02794___   1841 CAATGCCTGGGCTTGCATCTAATAACTGGTTCTTCTATAAAGAAGCCTAC   1890
                     ||||||||||.|||||..|.|..||||||||||.||||||.|||||.||.
BL01192___nrd   1841 CAATGCCTGGACTTGCGCCGAGCAACTGGTTCTACTATAAGGAAGCGTAT   1890

BSNT_02794___   1891 GATATGGACATGTTCAAGGTTGTGGATATGATCGCCACTATCCAGCAGCA   1940
                     ||||||||||||||||.||||||.||.||||||.|.||.||.||||||||
BL01192___nrd   1891 GATATGGACATGTTCAGGGTTGTCGACATGATCTCGACGATTCAGCAGCA   1940

BSNT_02794___   1941 CATTGATCAGGGAATCAGCTTTACATTGTTCTTAAAAGACACAATGACGA   1990
                     |.||||.||.||.||.|||||||||||||||.|.|||||.||||||||||
BL01192___nrd   1941 CGTTGACCAAGGCATAAGCTTTACATTGTTCCTGAAAGATACAATGACGA   1990

BSNT_02794___   1991 CCCGTGATTTAAACCGAATCGATCTGTATGCACATCATAGAGGTATTAAA   2040
                     |.||.|||||.|||||.||||||||.|||||.||.||||.|||.||.|||
BL01192___nrd   1991 CACGCGATTTGAACCGGATCGATCTTTATGCCCACCATAAAGGAATCAAA   2040

BSNT_02794___   2041 ACCATTTACTATGCAAGAACGAAAGATACTGGGCAAGATAGCTGCCTTTC   2090
                     ||..|||||||||||||||||||.|||||.||||||||..||||||||||
BL01192___nrd   2041 ACACTTTACTATGCAAGAACGAAGGATACAGGGCAAGAAGGCTGCCTTTC   2090

BSNT_02794___   2091 TTGTGTTGTTTGA   2103
                     ||||||.||||||
BL01192___nrd   2091 TTGTGTCGTTTGA   2103


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