Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01082 and BL01190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:35
# Commandline: needle
# -asequence dna-align/BSNT_01082___cotA.1.5803.seq
# -bsequence dna-align/BL01190___cotA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01082___cotA-BL01190___cotA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01082___cotA-BL01190___cotA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01082___cotA
# 2: BL01190___cotA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1672
# Identity: 1088/1672 (65.1%)
# Similarity: 1088/1672 (65.1%)
# Gaps: 260/1672 (15.6%)
# Score: 3235.0
#
#
#=======================================
BSNT_01082___ 1 ATGACACTTGAAAAATTTGTGGA--TGCTCTCCCAATCC-CAGAT----- 42
||||.||||||||||||.||.|| .|||| ||||.||| ||..|
BL01190___cot 1 ATGAAACTTGAAAAATTCGTTGACCGGCTC-CCCATTCCGCAAGTGCTTC 49
BSNT_01082___ 43 -ACACTAAAGCCAGTACAGCAATCAAAAGAAAAAACATACTACGAAGTCA 91
||.|.|||||.| ||.| ||.||||..||.||.||.|||||||
BL01190___cot 50 AACCCCAAAGCAA-------AAGC-AAGGAAATGACCTATTATGAAGTCA 91
BSNT_01082___ 92 CCATGGAAGAA-TGCACTCATCAGCTCCATCGCGATCTCCCTCCAACCCG 140
|||||.||||| |.|| .||.|||||.||.||||||||.||.||.||.||
BL01190___cot 92 CCATGAAAGAATTTCA-GCAGCAGCTTCACCGCGATCTGCCGCCGACTCG 140
BSNT_01082___ 141 CCTGTGGGGATACAACGGCTTATTTCCGGGGCCGACCATTGAGGTTAAAA 190
.||||..|||||.|||||..|.|.|||.||.||.|||.|.||.||..|.|
BL01190___cot 141 GCTGTTTGGATATAACGGAGTTTATCCCGGCCCTACCTTCGAAGTGCAGA 190
BSNT_01082___ 191 GAAATGAAAACGTATATGTAAAATGGATGAATAACCTTCC---TTCCACA 237
.|.|.|||||.||....||.||.|||.|.|||||.||||| |..|
BL01190___cot 191 AACACGAAAAAGTCGCAGTCAAGTGGTTAAATAAGCTTCCGGATCGC--- 237
BSNT_01082___ 238 CATTTCCTTCCGATTGATCACACCATTCATCACAGTGACAGCCAGCATGA 287
|||||.||.||..|.||.||.|| .|.||||..||||.||||.||.||
BL01190___cot 238 CATTTTCTCCCCGTCGACCATAC---GCTTCACGATGACGGCCATCACGA 284
BSNT_01082___ 288 AGAGCCCGAGGTAAAGACTGTTGTTCATTTACACGGCGGC-GTCACGCCA 336
| |..||.||.|||||.||.||||||||.|||||.||| || |||||.
BL01190___cot 285 A---CATGAAGTGAAGACGGTCGTTCATTTGCACGGAGGCTGT-ACGCCT 330
BSNT_01082___ 337 GATGACAGTGACGGGTATCCGGAGGCTTGGTTTTCCAAAGACTT---TGA 383
|.||||||.|||||.|||||.||||||||||...|.|||||||| ||
BL01190___cot 331 GCTGACAGCGACGGATATCCTGAGGCTTGGTACACAAAAGACTTCCATG- 379
BSNT_01082___ 384 ACAAACAGGACCTTATTTCAAAAGAGAGGTTTATCATTATCCAAACCAGC 433
|||| |||.||||..||..||||.|||||.|||.|.|||||.||..|||
BL01190___cot 380 -CAAA-AGGCCCTTTCTTTGAAAGGGAGGTGTATGAATATCCGAATGAGC 427
BSNT_01082___ 434 AGCGCGGGGCTA----TATTGTGGTATCACGATCACGCCATGGCGCTCAC 479
|| |..|||| |.|| ||||||||.||.||.||.|||||..||||
BL01190___cot 428 AG---GATGCTACAGCTCTT-TGGTATCATGACCATGCAATGGCCATCAC 473
BSNT_01082___ 480 CAGGCTAAATGTCTATGCCGGACTTGTCGGTGCTTATA--TCATTCATGA 527
.|||||.|||||.|||||.||.||||||||| ||||| |.||||..||
BL01190___cot 474 AAGGCTGAATGTATATGCGGGGCTTGTCGGT--TTATATTTTATTCGCGA 521
BSNT_01082___ 528 CCCAAAGGAAAAACGCTTAA---AAC-TGCCTTCAGA----CGAATACGA 569
| |.||||.|.|| ||.| ||| |||| || .|||||.||
BL01190___cot 522 C---AGGGAAGAGCG-TTCATTGAACTTGCC----GAAGGGAGAATATGA 563
BSNT_01082___ 570 TGTGCCGCTTCTTATCACAGACCGCACGATCA--------ATGAGGACGG 611
..|.||||||.|.|| .||.|||.| ||||.||.||
BL01190___cot 564 AATCCCGCTTTTGAT--------TCAGGATAAATCATTTCATGAAGATGG 605
BSNT_01082___ 612 TTCTTTGTTTTATCCAAGC-GCA-CCGGAAAACCCTTCTCCGTCACTGCC 659
|||.||||||||||| || ||| ||.||.||||||||.|||...||.||
BL01190___cot 606 TTCATTGTTTTATCC--GCGGCAGCCTGACAACCCTTCGCCGGATCTTCC 653
BSNT_01082___ 660 TAATCCTTCAATCGTTCCGGCTTTTTGCGGAGAAACCATACTCGTCAACG 709
..|.||.||.||.|||||||||||||||||.||.|||||..|.|||||||
BL01190___cot 654 GGACCCGTCGATTGTTCCGGCTTTTTGCGGTGATACCATTTTAGTCAACG 703
BSNT_01082___ 710 GGAAGGTATGGCCATACTTGGAAGTCGAGCCAAGGAAATACCGATTCCGT 759
|.|||||||||||.|.|...|||.|.||.||..|.||||||||.||.||.
BL01190___cot 704 GCAAGGTATGGCCTTTCGCTGAACTGGAACCCCGAAAATACCGTTTTCGG 753
BSNT_01082___ 760 GTCATCAACGCCTCCAATACAAGAACCTATAACCTGTCACTCGATAATGG 809
.|..|.||||||||||||||.||||.||.|.|.||||...|||||.|||.
BL01190___cot 754 ATACTGAACGCCTCCAATACGAGAATCTTTGAGCTGTATTTCGATCATGA 803
BSNT_01082___ 810 CGGAGAGTTTAT---------TCAGATTGGTTCAGATGGAGGGCTCCTGC 850
| || |||.||.||..|.||.||.||.||.||||
BL01190___cot 804 C---------ATCACATGTCATCAAATCGGCACGGACGGCGGTCTTCTGC 844
BSNT_01082___ 851 CGCGAT-CTGTTAAACTGAAT----------TCTTTCAGCCTTGCGCCTG 889
.|| || |.||.|||.|.||| || |||||.|
BL01190___cot 845 AGC-ATCCGGTCAAAGTCAATGAACTGGTGATC----------GCGCCGG 883
BSNT_01082___ 890 CTGAACGTTATGATATCATCATTGA--CTTCAC-AGCATATGAAGGAGAA 936
|||||.|.|..|||||||||.|||| .||||| |||| ||||||.||
BL01190___cot 884 CTGAAAGGTGCGATATCATCGTTGATTTTTCACGAGCA---GAAGGAAAA 930
BSNT_01082___ 937 TC---GATCATTTTGGCAAACAGCGCG----GGCTGCGGCGG---TGACG 976
.| || ||.| |.|||.| || ||||||||||| .||||
BL01190___cot 931 ACCGTGA-CACT---GAAAAAA---CGGATCGGCTGCGGCGGACAAGACG 973
BSNT_01082___ 977 TCA-ATCCTGAAACAGATGCGAATATCATGCAATTCAGAGTCACAAAACC 1025
|| ||||.||.||.|||||..|.||||||||||||.|..||.|||||||
BL01190___cot 974 -CAGATCCCGATACTGATGCCGACATCATGCAATTCCGCATCTCAAAACC 1022
BSNT_01082___ 1026 ATTGGCACAAAAAGA--------------CGAAA-----GCAGAAAGCCG 1056
.|||...|||||||| |||.| | ||||||
BL01190___cot 1023 TTTGAAGCAAAAAGATACAAGTTCATTGCCGAGAATATTG-AGAAAG--- 1068
BSNT_01082___ 1057 AAGTACCTCGCCTCATACCCTTCGGTACAGCATGA---AAG---AATACA 1100
|||| ||| || |||.|.| || ||| |||.|
BL01190___cot 1069 --------CGCC-CAT----TT---TACCGGA-GACACAAGATCAATGC- 1100
BSNT_01082___ 1101 AAACATCAGAACGTTAAAACTGGCA---GGCAC--CCAG--GACGAATAC 1143
|.|||| |||.|||.|| |||.| || | |||.||||.
BL01190___cot 1101 ---CCTCAG------AAATCTGTCATTGGGCGCGGCC-GTTGACCAATAT 1140
BSNT_01082___ 1144 GGCAGACCCGTCCTTCTGCTT---AATAACA-AACGCTGGCACGATCCCG 1189
||.|||||.| |||||||| ||.|||| ||.| |||||.||.||.|
BL01190___cot 1141 GGAAGACCTG---TTCTGCTTTTAAACAACACAAAG-TGGCATGAACCGG 1186
BSNT_01082___ 1190 TCACAGAAGCACCAAAAGTCGGCACAACTGAAATATGGTCCATTATCAA- 1238
|.||.|||.||||...|.||||||..|||||.||.|||||.||.|||||
BL01190___cot 1187 TAACCGAAACACCCGCACTCGGCAGCACTGAGATCTGGTCGATCATCAAT 1236
BSNT_01082___ 1239 -CCCGACACGCGGAACACATCCGATCCACCTGCATCTAGTCTCCTTCCGT 1287
||.||...||| |..|||||||||||..|.|||||.| |||..|
BL01190___cot 1237 GCCGGAAGGGCG--ATCCATCCGATCCATTTACATCTTG-----TTCAAT 1279
BSNT_01082___ 1288 GTAT-----TAGACCGGCGGCCGTTTGATATCGCCCGTTATCAAGAAAGC 1332
.||| |.||||..||||||||||||||||..||.|||||.||||.|
BL01190___cot 1280 TTATGATTCTCGACCACCGGCCGTTTGATATCGAGCGGTATCAGGAAAAC 1329
BSNT_01082___ 1333 GGGGAA-TTGTCCTATACCGGTCCGGCTGTCCCGCCGCCGCCAAGTGAAA 1381
||.||| |||| .|.||||||||||||.||.||.|||.|.||.|.|||||
BL01190___cot 1330 GGAGAACTTGT-TTTTACCGGTCCGGCAGTTCCTCCGGCACCGAATGAAA 1378
BSNT_01082___ 1382 A-GGGCTGGAAAGACACCATTCAAGCGCATGCAGGTGAAGTCCTGAGAAT 1430
| ||||| ||||||||||.|..|||..|...|.|||..||| ||
BL01190___cot 1379 AGGGGCT-GAAAGACACCGTCAAAGTACCCCCGGGTTCAGT-----GA-- 1420
BSNT_01082___ 1431 CGCG-------GCGACATTCGGTCCGTACAGCGGACGATACGTATGGCAT 1473
|||| ||.||.||.|..|||||||||||..||||.||.|||||.
BL01190___cot 1421 CGCGCATTATCGCCACCTTTGCGCCGTACAGCGGCAGATATGTTTGGCAC 1470
BSNT_01082___ 1474 TGCCATATTCTAGAGCATGAAGACTATGACATGATGAGACCGATGGATAT 1523
|||||.||.||.|||||.|||||.||.||.||||||.|.||..|.||..|
BL01190___cot 1471 TGCCACATCCTTGAGCACGAAGATTACGATATGATGCGCCCTCTTGAAGT 1520
BSNT_01082___ 1524 AACAGA---TCCCCATAAATAA 1542
.||||| ||..|||.|||||
BL01190___cot 1521 GACAGATGTTCGTCATCAATAA 1542
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